PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G434100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 229aa MW: 26788.2 Da PI: 7.182

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G434100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.3	1.7e-25	63	149	3	89
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y YA +vGFsvrk+k++ + +g++ +r fvCskeg+r+++k+ +ker+ r e+rtgCka+++vk++ +++w v++++++HnH+l Aqcoe2G434100.1.p 63 YYLYAWKVGFSVRKAKKYLR-ADGSVRSRIFVCSKEGERQKDKRCkyVRKERKDRIEKRTGCKARMVVKNR-ENEWIVSEIVHQHNHPL 149 889**********98886.9999**********999877678999***************9.99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.4E-23	63	149	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MDTADITYSS TNFSPKDQVV GIDDQEMREG HLHVLNDIDL EKSDETIYEG LTFESENEAY 60 EQYYLYAWKV GFSVRKAKKY LRADGSVRSR IFVCSKEGER QKDKRCKYVR KERKDRIEKR 120 TGCKARMVVK NRENEWIVSE IVHQHNHPLG ILSKTITPLD DKDRKIRELS EELQREKKLR 180 IACQNSLNQI LKDIEEHTQN LSSKVEVAVT NMKELESDEQ ASPDPHRR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253894	0.0	AC253894.1 Aquilegia coerulea clone COL02-M12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5CEH1	1e-168	A0A2G5CEH1_AQUCA; Uncharacterized protein
STRING	Aquca_058_00054.1	1e-169	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-29	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G434100.1.p