PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G434600.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 157aa MW: 17651.2 Da PI: 8.7471

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G434600.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.7	2.2e-24	47	135	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF +r+ + ++s+ +g+i +r++ C+keg+ + + k + r++r+++r gCka++ +k ek+gkw v k + +HnH+l+ Aqcoe2G434600.3.p 47 FYDEYARRLGFVMRVMSCRRSEVDGRILSRRLGCNKEGHCVSIRGKFGTVRKPRTSNREGCKAMILIKIEKSGKWIVRKYVRDHNHPLV 135 9************************************999999989*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-22	47	135	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MNSETFVDEG SGMESSIVAE FGGSEGDALI EPYEGLEFDS EDHAKAFYDE YARRLGFVMR 60 VMSCRRSEVD GRILSRRLGC NKEGHCVSIR GKFGTVRKPR TSNREGCKAM ILIKIEKSGK 120 WIVRKYVRDH NHPLVVSSRE SRHTMVVLRG VTAFIC*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023892029.1	2e-74	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	7e-27	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2G5CEF4	1e-110	A0A2G5CEF4_AQUCA; Uncharacterized protein
STRING	Aquca_058_00049.1	1e-103	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-66	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G434600.3.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]