PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G008000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

TCP

Protein Properties

Length: 285aa MW: 29823 Da PI: 10.4531

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G008000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.2	7e-39	47	149	2	101
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas.nsssg...k 89 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ a+s s+ +s ++s++ + Aqcoe3G008000.1.p 47 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-AVSLSVRGSsSPSISaslD 137 78**************************************************************99999777.3333333330222222222 PP TCP 90 aaksaakskksq 101 ++++++++++++ Aqcoe3G008000.1.p 138 HKPASHNNNNNN 149 222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.5E-34	53	148	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	53	107	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSNNNNNNNN TDGVTNGVNN GGGALMDSTT QRQQQQQQSN GVGGALAVKK PPSKDRHSKV 60 DGRGRRIRMP IICAARVFQL TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSAV 120 SLSVRGSSSP SISASLDHKP ASHNNNNNNS PTAITPTMLG ATPFLLGKRL RSDDDSDEGA 180 AVAASAAAAA NGFWALPARA DFGQVWSFAA APEMVVPMPT VASQQQQQQQ QSMAARFGHQ 240 QQSMGEGSAA RLGNYFPIAQ GHLNLLASLS GAPPSSGRRD DEPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249637.1	1e-115	PREDICTED: transcription factor TCP7
Swissprot	Q9FMX2	5e-86	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2G5C5U9	0.0	A0A2G5C5U9_AQUCA; Uncharacterized protein
STRING	Aquca_091_00069.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	7e-50	TCP family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G008000.1.p