PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G009700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARR-B
Protein Properties Length: 649aa    MW: 70757.6 Da    PI: 6.7148
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G009700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.33.4e-28225278155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Aqcoe3G009700.1.p 225 KPRVVWSVELHQQFVTAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 278
                        79*******************.********************************8 PP
2Response_reg77.16.5e-26401481109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+ + +++l+ +l+k  y +v+++ +++ al+ll+e++  +D+++ D+ mp+mdG++ll+     e++lp+i+++a g  + + + +
  Aqcoe3G009700.1.p  40 VLVVDDDTTCLRILEHMLRKCAY-HVTTCCQATVALNLLRERKgcFDVVISDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGI 129
                        89*********************.****************************************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        k Ga d+l Kp+  eel +
  Aqcoe3G009700.1.p 130 KHGACDYLIKPVRLEELKN 148
                        ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.56E-3537159IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-4137167No hitNo description
SMARTSM004486.9E-3038150IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.42539154IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.9E-2340148IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.83E-2641153No hitNo description
SuperFamilySSF466891.11E-19222282IPR009057Homeodomain-like
PROSITE profilePS5129410.135222281IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-29224283IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-24225278IPR006447Myb domain, plants
PfamPF002491.6E-6227276IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MELELELEFQ SSTTTSGVHQ QSKSSSTPTT SYEFPVGLRV LVVDDDTTCL RILEHMLRKC  60
AYHVTTCCQA TVALNLLRER KGCFDVVISD VHMPDMDGFK LLELVGLEMD LPVIMMSADG  120
RTSAVMRGIK HGACDYLIKP VRLEELKNIW QHVVRKKWTG SRDPEQSGSM EETDRLKRAG  180
DDIDNASSAN EGTDGSWKVQ KKRKDAKEED DEGDLDNDDP STCKKPRVVW SVELHQQFVT  240
AVNQLGIDKA VPKRILELMN VPGLTRENVA SHLQKFRLYL KRLSGVAQQQ SGFSNVYYGH  300
GESNAKVGSL SGLDIQALAA SGQIPPQTLA AIHDEVFGRP TSSLVLPVMD KSVLLQASLQ  360
RANCISVEHG VSFGQPIIKC HSNISKRFPS SSISVEDIPS RLGTWPNNFS TVGSSKNLGE  420
SNSESNNMVT KILQQQKRHQ SALPDSSHTI NVQPSCVVVP SQSRSNFHAG NIAAPPNQSS  480
AFSSSSLVDY SYLSSQSNNF SVGIGQVPDA GLKVTGVLDG YSVPGSISSV SSYSGLTDSV  540
SSWQVQNSIT KLQGSDMCSL SGTYTSKRGA LPNQEPDRNL GFVGKGSSLP SRFAMDDFEL  600
PMSNLSHGKA YRNNDRGVKQ ELNFDFIENG MPVIRQFSPS DVMGVLSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22224284464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274996.10.0PREDICTED: two-component response regulator ORR21-like
RefseqXP_010275062.10.0PREDICTED: two-component response regulator ORR21-like
SwissprotQ8H7S71e-172ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A2G5C6080.0A0A2G5C608_AQUCA; Uncharacterized protein
STRINGAquca_091_00086.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-119response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]