PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G009700.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARR-B
Protein Properties Length: 557aa    MW: 60454.9 Da    PI: 7.1352
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G009700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.8e-28133186155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Aqcoe3G009700.3.p 133 KPRVVWSVELHQQFVTAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 186
                        79*******************.********************************8 PP
2Response_reg32.25.6e-1215653109
                        CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
       Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                        mp+mdG++ll+     e++lp+i+++a g  + + + +k Ga d+l Kp+  eel +
  Aqcoe3G009700.3.p   1 MPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGIKHGACDYLIKPVRLEELKN 56 
                        9*********87754.558***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.7E-16167IPR011006CheY-like superfamily
CDDcd001562.72E-13161No hitNo description
PROSITE profilePS5011024.956162IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.9E-20175No hitNo description
PfamPF000729.0E-9156IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466898.96E-20130190IPR009057Homeodomain-like
PROSITE profilePS5129410.135130189IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-29132191IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-24133186IPR006447Myb domain, plants
PfamPF002491.3E-6135184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MPDMDGFKLL ELVGLEMDLP VIMMSADGRT SAVMRGIKHG ACDYLIKPVR LEELKNIWQH  60
VVRKKWTGSR DPEQSGSMEE TDRLKRAGDD IDNASSANEG TDGSWKVQKK RKDAKEEDDE  120
GDLDNDDPST CKKPRVVWSV ELHQQFVTAV NQLGIDKAVP KRILELMNVP GLTRENVASH  180
LQKFRLYLKR LSGVAQQQSG FSNVYYGHGE SNAKVGSLSG LDIQALAASG QIPPQTLAAI  240
HDEVFGRPTS SLVLPVMDKS VLLQASLQRA NCISVEHGVS FGQPIIKCHS NISKRFPSSS  300
ISVEDIPSRL GTWPNNFSTV GSSKNLGESN SESNNMVTKI LQQQKRHQSA LPDSSHTINV  360
QPSCVVVPSQ SRSNFHAGNI AAPPNQSSAF SSSSLVDYSY LSSQSNNFSV GIGQVPDAGL  420
KVTGVLDGYS VPGSISSVSS YSGLTDSVSS WQVQNSITKL QGSDMCSLSG TYTSKRGALP  480
NQEPDRNLGF VGKGSSLPSR FAMDDFELPM SNLSHGKAYR NNDRGVKQEL NFDFIENGMP  540
VIRQFSPSDV MGVLSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22132192464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274996.10.0PREDICTED: two-component response regulator ORR21-like
RefseqXP_010275062.10.0PREDICTED: two-component response regulator ORR21-like
SwissprotA2XE311e-139ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-139ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A2G5C6080.0A0A2G5C608_AQUCA; Uncharacterized protein
STRINGAquca_091_00086.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-87response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]