PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G017600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 164aa    MW: 18867.1 Da    PI: 10.2638
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G017600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.91e-111140130
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyy 30
                       C+ C+tt++++WR gp g+k+LCnaC +++
  Aqcoe3G017600.1.p 11 CADCKTTESSCWRCGPAGPKSLCNACYMRQ 40
                       **************************8875 PP
2GATA23.11e-075787134
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                       C  C+tt+T+l R    g+k+LC+aC l+ r ++
  Aqcoe3G017600.1.p 57 CGDCKTTETSLRR---YGPKSLCSACYLRRRNQK 87
                       99***********...88899********99876 PP
3GATA37.92.4e-12101132133
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                        C+ C+tt+T+lWR gp g++ LCnaC l+ r +
  Aqcoe3G017600.1.p 101 CADCKTTETSLWRCGPAGQS-LCNACYLRPRNR 132
                        ********************.*******98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-5549IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-7946No hitNo description
Gene3DG3DSA:3.30.50.101.4E-81048IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501148.551136IPR000679Zinc finger, GATA-type
PfamPF003208.1E-101140IPR000679Zinc finger, GATA-type
SMARTSM004013.4E-451100IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.1E-55589IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.57E-993136No hitNo description
Gene3DG3DSA:3.30.50.102.7E-1195139IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.99595127IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-5101145IPR000679Zinc finger, GATA-type
PfamPF003206.5E-10101133IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MEKVARVINI CADCKTTESS CWRCGPAGPK SLCNACYMRQ LNRKKREVSR RNIAYVCGDC  60
KTTETSLRRY GPKSLCSACY LRRRNQKRKK RVLRKKNNNQ CADCKTTETS LWRCGPAGQS  120
LCNACYLRPR NRMRRELLRK KIEDEYEAAS ALLLLSCIEI KNQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288RRNQKRK
2129140RNRMRRELLRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CQD11e-112A0A2G5CQD1_AQUCA; Uncharacterized protein
STRINGAquca_041_00157.11e-113(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.15e-11cytokinin-responsive gata factor 1