PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G021400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 746aa    MW: 85697.7 Da    PI: 8.1793
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G021400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.34.4e-12671402091
               FAR1  20 kkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                           ++  +++ r+f Cs+ g re++ ++ ++++++ r  tr++C a l++  ++  + w v  + ++HnH lap
  Aqcoe3G021400.1.p  67 FFYNEYAKFKGRRFICSCAGVRERKWTNlHKRRKKARRLTRCNCPAALNIVYDDeLNMWTVRGFMSQHNHVLAP 140
                        45556677899*************9999677788899*************9999899*************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-973140IPR004330FAR1 DNA binding domain
PfamPF105515.2E-36261355IPR018289MULE transposase domain
PROSITE profilePS5096610.806540576IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-6551578IPR006564Zinc finger, PMZ-type
PfamPF044344.5E-6552574IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MSAFVDEFVE DFSDDSEAEG DNPRRRNADF LYKVGLRLQD EIHDDMGEIS DEDMLRARFN  60
TDEDAYFFYN EYAKFKGRRF ICSCAGVRER KWTNLHKRRK KARRLTRCNC PAALNIVYDD  120
ELNMWTVRGF MSQHNHVLAP SGGSHFLRSH RKVSLSNAVL AQNLYALGVS KKLVMDIIIS  180
KSGSHAAAGC TARDLYNQMN RARVERIIDG DANLVNSFLE DMNVRDPGFF KKIQVNEKKQ  240
LTKLFWSDSQ SQEDYKLFGD VLMFDSTYRT NRYDMPLVVF AGVNNHRHTV IYALALMNNE  300
TIDSYEWALK TFLAAMDGIA PKSVITDGDA AIRNAIENVF PKSKHRLCVW HVVQNAITNV  360
WTDGFVKGFV EAMFCKGPPD AFEKKWAELL IEYKTVAEQK WVHNIYEKKE MWAEAYLREY  420
FFAGCRSNQR CESINSVVRV CVKSGLSLIE LVDKLLQKIR HIRYRDFEAE VNTTMTRSAQ  480
IPNLTLIGEQ AEALYTRAGY EYLFKQLLHE PSYVVNESYE DGEDIIKYLV NRHMHPNAPA  540
TVEYNREKDA YNCTCKLFER VGFLCRHILA VLKHTHVKAL PKSCILHRWT REAKSSSLDF  600
GTNPTTSCRL GFGLRLKELE EYSRDLFMWG CESVQRCTMV KGHIAAFDKG EVAQGFDETP  660
VPKNPLGFEE EPVASTPPQS FPPDNIVDPQ RDLGRRGGPR RAKRKMFHQR TSTRCGICHI  720
VGHSRRTCPS NYLSLDFLNL GLVCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189104RKWTNLHKRRKKARRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-97FAR1-related sequence 5