PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G023300.4.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NF-YC

Protein Properties

Length: 259aa MW: 28803.7 Da PI: 4.6722

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G023300.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	98.7	4.6e-31	1	70	30	99
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +k++edvkmis++aPv+++kace+f+lel+lr+wlha +++r+tl++ d++ a+ + ++fdfl+divp++ Aqcoe3G023300.4.p 1 MKSNEDVKMISSDAPVIFAKACEIFVLELSLRTWLHAASSRRQTLRRRDVSRAIGNCQTFDFLLDIVPES 70 9*******************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.0E-24	1	69	IPR009072	Histone-fold
Pfam	PF00808	9.9E-10	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	4.37E-19	1	69	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MKSNEDVKMI SSDAPVIFAK ACEIFVLELS LRTWLHAASS RRQTLRRRDV SRAIGNCQTF 60 DFLLDIVPES HEEDEVTGGG NEEKDVEPSQ EPDVKPFPVI GPNQVPQNYA EDEVTGQWRG 120 GWQSNGMQSQ LLDFNLSNNY FSGEYHGERR RGALPRGSDA VQISLTGANH LRLNSAYNAG 180 EYLGESRRRA LPRPSDAVEI SLTGGTHLQL NSYNAVPHDE ELNELTIYGG NRFGPESSSS 240 SELFFPTLGD NRLNHDYM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-23	1	68	27	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5CQ59	3e-77	A0A2G5CQ59_AQUCA; Uncharacterized protein
STRING	Aquca_041_00104.1	5e-78	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	3e-28	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Aqcoe3G023300.4.p