PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G023400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 354aa    MW: 38851.2 Da    PI: 7.7376
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G023400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.55.8e-15279304126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +ktelC+ +++tG C+yGd C+FaHg
  Aqcoe3G023400.1.p 279 FKTELCNKWQQTGACPYGDHCQFAHG 304
                        79***********************9 PP
2zf-CCCH18.34.1e-06317341125
                        --S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                        ykte Cr  +++  C+yG rC+F H
  Aqcoe3G023400.1.p 317 YKTEVCRMVLAGDNCPYGHRCHFRH 341
                        9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.01E-11275310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-18275311IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-9278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.023278306IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-12279304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-8312347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-12312345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821316344IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-5316343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MQRHTSSYGD GSNNANNLSP IPFNKQLFST PNEKFNSSLF TSPSSFGSSV SFTPSPSSSS  60
CIEENSAAVA TENRLYLARL TLEYQELVAR YGLCLTHLQE AVKEAEDLRE QNVKLRAANL  120
DLTKRLTLLT QVSLGNRYLS SGFPSLSIIN DFRNLCVGDN GNGGGLNNHV SSGDVSSGDV  180
SDNSPTSVID NSPTSVIENK QFEKKSGGDE RVALPKSISI RSSGYLKANQ PGGSSAASNR  240
INRPRSVSPV DNETQRVFVP GGNKEEEALE FDVFNQGMFK TELCNKWQQT GACPYGDHCQ  300
FAHGVNELRP VIRHPRYKTE VCRMVLAGDN CPYGHRCHFR HALTEQERFM RAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21279345470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248453.11e-137PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9F52e-74C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2G5CQ720.0A0A2G5CQ72_AQUCA; Uncharacterized protein
STRINGAquca_041_00103.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-71C3H family protein