PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G034500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 794aa    MW: 90872.6 Da    PI: 6.3169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G034500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12e-05140195633
                        HHHHHHHHHHHHHHHHHHHCTSCC.C.............................. CS
                HLH   6 nerErrRRdriNsafeeLrellPk.as...........................ka 33 
                         + E+r+R ++ + f++Lr+l P+ ++                           k 
  Aqcoe3G034500.1.p 140 TILEQRYRTNVGDLFAQLRKLHPWaDPkivkqkideklygllgertaaddekplKK 195
                        789*********************66577776666666666666665555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045588.0E-529166IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045576.2E-13169261IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
CDDcd008071.06E-137268578No hitNo description
TIGRFAMsTIGR004405.8E-190269789IPR004514Glutamine-tRNA synthetase
Gene3DG3DSA:3.40.50.6202.2E-39269337IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523743.85E-86269582No hitNo description
PfamPF007493.8E-120269573IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
PRINTSPR009876.8E-7272284IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780275286IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009876.8E-7301314IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.101.5E-42341445No hitNo description
PRINTSPR009876.8E-7446456IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6202.2E-39448497IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.104.0E-31498575IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
PfamPF039501.2E-39576767IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
SuperFamilySSF507155.13E-55576786IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
Gene3DG3DSA:2.40.240.106.5E-30584694IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.109.8E-28695785IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MVVKDENDKS VELFLKIGLD EKTAKNTVAN NKVTNNLTAV IHEAGVIDGC DKTIGNLLYT  60
VATKYPANAL IHRPRLLEYV VSSKIKTPAQ LEAALLFLGR VASEEFESKN FEEACGVGVE  120
VSTEEIELSV SKVFEEKKET ILEQRYRTNV GDLFAQLRKL HPWADPKIVK QKIDEKLYGL  180
LGERTAADDE KPLKKKKEKP AKAEAQAKAA ETTTPPPPEE ELNPFAIFPQ PDENYKVHTE  240
IFFSDGPVLR VCNTREMLDK HLKATGRRVF TRFPPEPNGY LHIGHAKAMF VSFGLAKERD  300
GCCYLRYDDT NPEAEKKEYI DHIEEIVEWM GWKPFKITYT SNYFQDLYDL AVELIQRGHA  360
YVDHQTPEEV KASREKKENS PWRDRPVAES LKLFNDMKRG MIEEGKATLR MKQDMQSDNY  420
NMYDLIAYRI KFTPHPHAGD KWCIYPSYDY AHCIVDSLEN ITHSLCTLEF ETRRASYYWL  480
LDALGLYHPY VWEYSRLNVT NTVMSKRKLN RLVTEKWVDG WDDPRLMTLA GLRRRGVTSS  540
SINTFVRGIG ITRSDNSMIQ LERLEYHVRE ELNKTASRAM VVLHPLKVVI SNLEDNMIMD  600
LDAKKWPDAQ TDDKSSLYKV PFSNVVYIER SDFRMKDSKD YYGLAPGKSV MLRYAFPIKC  660
TEAIYGDDQE TVVEIHAEYD PSKTTKPKGV LHWVAQPSPG VNPLKVEVRL FDKLFCSENP  720
AELDDWLADL NPLSKEVIPE AFAVGCLCNA AVGDKFQFER LGYFVVDPDS TSDKLVFNRT  780
VTLRDSYTKG GNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ye9_A0.0107857771Glutamine--tRNA ligase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283636.10.0PREDICTED: glutamine--tRNA ligase, cytoplasmic
SwissprotP527800.0SYQ_LUPLU; Glutamine--tRNA ligase
TrEMBLA0A2G5CPQ40.0A0A2G5CPQ4_AQUCA; Uncharacterized protein
STRINGAquca_041_00012.10.0(Aquilegia coerulea)