PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G037900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 317aa    MW: 35975 Da    PI: 6.7745
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G037900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58.2e-12179204126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y   +C+++ +tG+C +Gd CkF+H+
  Aqcoe3G037900.1.p 179 YQPDICKDYKETGYCGFGDACKFMHD 204
                        67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.23E-9177209IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7178205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577178206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-11179209IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9179204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.105.3E-13249297IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.1E-8255296No hitNo description
SuperFamilySSF578501.82E-12255298No hitNo description
PROSITE profilePS5008910.557256294IPR001841Zinc finger, RING-type
CDDcd001626.31E-8256297No hitNo description
SMARTSM001848.8E-5256293IPR001841Zinc finger, RING-type
PROSITE patternPS005180271280IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEDSTEPQNS EQVCNFFRKP SRNKNIRKRK TEDVEEEEDV EESSIVINGK EKKQPQSDNK  60
LLFTTGSSKK SNNTVFQYES SKEIQVQNDS KATATLETET DFSQDARAIR ERQLKQAENA  120
LKGKDKKAGD EKVYKGLHGY TDYKAGFRRE QTISSEKAGG SHGPLRASAH IRVSARFDYQ  180
PDICKDYKET GYCGFGDACK FMHDRGDYKS GWQMEREWDE AEKLRKKNLA MGLLDEEDEG  240
AGEGDSDDEN ALPFACFICR QSFVDPVVTK CKHYFCEHCA LKHHSKNKRC FVCNEPTLGI  300
FNTAHEIKKK AVADGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-681131012316RING finger protein 113A
5z58_M3e-681131012316RING finger protein 113A
6ff4_t3e-681131012316RING finger protein 113A
6ff7_t3e-681131012316RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112176.11e-176zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-161C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2G5D8B00.0A0A2G5D8B0_AQUCA; Uncharacterized protein
STRINGAquca_026_00303.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-159C3H family protein