PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G039200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

LBD

Protein Properties

Length: 291aa MW: 32092 Da PI: 7.0529

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G039200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.5	1.6e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql Aqcoe3G039200.1.p 4 SCNGCRVLRKGCSENCSIRPCLqwiktPESQANATVFLAKFYGRAGLMNLINSGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQL 95 6***************************************************************************************** PP DUF260 88 eqlkaelallke 99 +q+++e++l ++ Aqcoe3G039200.1.p 96 CQAAVEAVLKGT 107 ***9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	8.6E-95	1	287	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.304	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKT PESQANATVF LAKFYGRAGL MNLINSGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGTPIM QISSEVAAIS 120 PSPPLKAYDI RHVSKDENSS AASQELHKVK TRSRFKRSGA GKAANNKQVN ESNKVHTYLD 180 RAPSHESSVS HQTELNNGEG CSRETESMFS VETVEASLVN RADPEPVPKF DNFNGSDADD 240 NNNDDVELEL TLGFEPSRRE KSMSPKKWRD EINNSYTDTC KIEVGIDYAV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263769.1	1e-127	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	2e-93	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2G5D898	0.0	A0A2G5D898_AQUCA; Uncharacterized protein
STRING	Aquca_026_00293.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-95	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Aqcoe3G039200.1.p