PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G039600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family CO-like
Protein Properties Length: 432aa    MW: 48195.6 Da    PI: 5.3669
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G039600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box32.61.6e-101659340
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       +r C+ + +k+++++C+ ++ +lC++C  + H+       H++v
  Aqcoe3G039600.1.p 16 ARACDSCMKKRARWYCTADDAFLCQTCDASVHSAnslarrHERV 59
                       578*****************************657788888876 PP
2CCT68.22.3e-23373416144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Aqcoe3G039600.1.p 373 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 416
                        9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.3341461IPR000315B-box-type zinc finger
SMARTSM003362.4E-111461IPR000315B-box-type zinc finger
PfamPF006438.2E-91659IPR000315B-box-type zinc finger
CDDcd000214.33E-111761No hitNo description
PROSITE profilePS5101716.083373415IPR010402CCT domain
PfamPF062035.8E-18373415IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSSNKKTANA LGGKTARACD SCMKKRARWY CTADDAFLCQ TCDASVHSAN SLARRHERVR  60
LKTASLKPAE ENPVENSHPA WHHGFRRKAR TPRHGKPSQH QNKIEEPIVN LPLVPEIGSD  120
EVSIDENEEH LLYRVPIFDP FVAELYASTT PNETTNTVDS ATPTTTTPIG AESKIVLHDY  180
GHDGTVDFEN LPGLLPSDMD LADFAADVET LLGRGLDEDS FCMEGLGLLD TKEEIYYDHH  240
SDKVKLEEDE EDVKNMVACH QFGSDLDLSR ETLDLNFDCD SPTTGEEEEE KVNMTINYGY  300
KGEEKISLRL DYDAVIAAWA SQGSPWMNGD RPQFNPNDCW PDSLGTYPAE AHQMYGDMGS  360
MGGHVAMGGD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRTSFAV  420
GCGGGSSSFP F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383399RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265147.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2G5D8C10.0A0A2G5D8C1_AQUCA; Uncharacterized protein
STRINGAquca_026_00289.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-90B-box type zinc finger protein with CCT domain