PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G063500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 159aa MW: 18278.3 Da PI: 8.888

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G063500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.4	7.9e-11	75	133	38	96
EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEE CS B3 38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkv 96 + ++r W ++ ++s++ + +GW+ Fv +n Lk+gD +vF+l+ ++ + +++v++ Aqcoe3G063500.1.p 75 VLACRNRNWMTNY--MGNSNKRFDVTGWRIFVTDNMLKVGDGCVFELMeWStKLIKFKVQI 133 344578999999..66666644555*******************885654555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.35E-12	38	133	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.7E-13	38	135	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.532	42	137	IPR003340	B3 DNA binding domain
CDD	cd10017	3.41E-11	45	135	No hit	No description
Pfam	PF02362	4.9E-9	50	132	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MEFLARRSIH GYTDKGKGKM KQKHSQSFDC DEHQPLEDKP YMLFIMAKYH VGNPYQLVLP 60 VKINRLLPEA TVPVVLACRN RNWMTNYMGN SNKRFDVTGW RIFVTDNMLK VGDGCVFELM 120 EWSTKLIKFK VQILDGDLPP ELFQKCYGNT SAAPITIE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5E0M9	3e-44	A0A2G5E0M9_AQUCA; Uncharacterized protein
STRING	Aquca_013_00263.1	4e-45	(Aquilegia coerulea)

Link Out ? help Back to Top
Phytozome	Aqcoe3G063500.1.p