PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G065700.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 64aa MW: 7179.42 Da PI: 10.9212

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G065700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.2	3.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+i+fs +gkl+eys+ Aqcoe3G065700.1.p 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSIKGKLFEYST 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.819	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.7E-39	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.61E-35	2	61	No hit	No description
SuperFamily	SSF55455	1.1E-28	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-31	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-31	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 64 aa Download sequence Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFSI KGKLFEYSTN 60 DSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	6e-21	1	61	1	61	MEF2C
5f28_B	6e-21	1	61	1	61	MEF2C
5f28_C	6e-21	1	61	1	61	MEF2C
5f28_D	6e-21	1	61	1	61	MEF2C
6byy_A	6e-21	1	61	1	61	MEF2 CHIMERA
6byy_B	6e-21	1	61	1	61	MEF2 CHIMERA
6byy_C	6e-21	1	61	1	61	MEF2 CHIMERA
6byy_D	6e-21	1	61	1	61	MEF2 CHIMERA
6bz1_A	6e-21	1	61	1	61	MEF2 CHIMERA
6bz1_B	6e-21	1	61	1	61	MEF2 CHIMERA
6bz1_C	6e-21	1	61	1	61	MEF2 CHIMERA
6bz1_D	6e-21	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024961438.1	1e-34	truncated transcription factor CAULIFLOWER A-like
Swissprot	D7SMN6	5e-34	FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBL	A0A0S1YYN3	2e-36	A0A0S1YYN3_NIGDA; FRUITFULL2 protein
TrEMBL	U3RBS7	2e-36	U3RBS7_NIGSA; FRUITFULL-like protein (Fragment)
STRING	POPTR_0004s11430.1	2e-34	(Populus trichocarpa)
STRING	XP_010101658.1	2e-34	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	2e-36	AGAMOUS-like 8

Link Out ? help Back to Top
Phytozome	Aqcoe3G065700.1.p

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]