PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G079400.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NAC

Protein Properties

Length: 363aa MW: 41393.8 Da PI: 7.3668

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G079400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.5	5.3e-53	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 + pGfrFhPtdeelv++yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+tk+g+Wkatg+d++v Aqcoe3G079400.2.p 14 MLPGFRFHPTDEELVSFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTKAGFWKATGTDRPV 104 579*************************.89***********9888999********************************* PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl Aqcoe3G079400.2.p 105 YSSdGSKCIGLKKSLVFYQGRAAKGMKTDWMMHEFRL 141 966677***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	57.334	14	172	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-57	14	172	IPR003441	NAC domain
Pfam	PF02365	5.1E-26	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNEKHESDNI DEIMLPGFRF HPTDEELVSF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT KAGFWKATGT DRPVYSSDGS KCIGLKKSLV 120 FYQGRAAKGM KTDWMMHEFR LPSLTNSMAL KRPIDKNLPA NDAWAICRIF KKTNSVAQRA 180 LSQSWISSVS TTSTTETSSS TQLNCNNNDF KTSNVYSFPS TDIPSIKPIE QISSMPSILS 240 IINGDFPSGF NMFSTLDMSP PSLLGDNMNT SNNLDFAGIQ QLCDSFPIRS QNEIQAGNTM 300 TSKEDVWFNS PKVSNVHNQL GNFESVEFPI PMFDEWRPNL LWDPLSFPTE FSIDYSANKC 360 YI*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNEKHESDNI DEIMLPGFRF HPTDEELVSF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP  60
KLASTGEKEW YFYCPRDRKY RNSARPNRVT KAGFWKATGT DRPVYSSDGS KCIGLKKSLV  120
FYQGRAAKGM KTDWMMHEFR LPSLTNSMAL KRPIDKNLPA NDAWAICRIF KKTNSVAQRA  180
LSQSWISSVS TTSTTETSSS TQLNCNNNDF KTSNVYSFPS TDIPSIKPIE QISSMPSILS  240
IINGDFPSGF NMFSTLDMSP PSLLGDNMNT SNNLDFAGIQ QLCDSFPIRS QNEIQAGNTM  300
TSKEDVWFNS PKVSNVHNQL GNFESVEFPI PMFDEWRPNL LWDPLSFPTE FSIDYSANKC  360
YI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-53	5	178	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-53	5	178	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-53	5	178	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-53	5	178	7	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-53	5	178	10	174	NAC domain-containing protein 19
3swm_B	3e-53	5	178	10	174	NAC domain-containing protein 19
3swm_C	3e-53	5	178	10	174	NAC domain-containing protein 19
3swm_D	3e-53	5	178	10	174	NAC domain-containing protein 19
3swp_A	3e-53	5	178	10	174	NAC domain-containing protein 19
3swp_B	3e-53	5	178	10	174	NAC domain-containing protein 19
3swp_C	3e-53	5	178	10	174	NAC domain-containing protein 19
3swp_D	3e-53	5	178	10	174	NAC domain-containing protein 19
4dul_A	3e-53	5	178	7	171	NAC domain-containing protein 19
4dul_B	3e-53	5	178	7	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018850709.1	1e-149	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	1e-101	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2G5ENY9	0.0	A0A2G5ENY9_AQUCA; Uncharacterized protein
STRING	Aquca_006_00295.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	7e-97	NAC family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G079400.2.p

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]