PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G086400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C3H

Protein Properties

Length: 715aa MW: 79534.2 Da PI: 5.6328

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G086400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3e-06	127	140	13	26
S--TTTTT-SS-SS CS zf-CCCH 13 GtCkyGdrCkFaHg 26 G C+yG +C+F+H+ Aqcoe3G086400.1.p 127 GACRYGLKCRFSHD 140 59***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.953	116	142	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.343	155	180	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	1.6E-74	358	601	IPR013785	Aldolase-type TIM barrel
CDD	cd02801	7.76E-93	362	597	No hit	No description
SuperFamily	SSF51395	1.78E-63	362	675	No hit	No description
Pfam	PF01207	6.3E-53	365	599	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	446	464	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence Send to blast
MDGDGVACST EVVVVVEEEE ERVAAEADSL NNKAIEKEEK DVVEEVVRIQ LTTEELIAKS 60 IAPVKTQYLR PPPPRSKDGG EGIDKKSVSS NLIKEKKSKR QLKRERQQEQ KSALHICAEV 120 AKAGNVGACR YGLKCRFSHD LEAFKVQKPA DIEGTCPFLN YEGPCPYGLA CRFSSTHRLE 180 VTAESSEFQK KTSEVNGLKK DVQKLLWKNK MSFPKADDQL KVLGLLNKSK TKDAEVKENA 240 GDEPVLNGSY ADCEVIDLGD DVISDSVSTK DCCPEVPVEE GILDNAVAVD DSQPSKKAKI 300 AVIDNCGSNE KDNGLDSLKE GSQDIHAQTE VQVIPTDTYY CESDKSLKIH PREKKLIDFR 360 GKLYLAPLTT VGNLPFRRVC KTLGADITCG EMAMCTNLLQ GQASEWALLR RHSSEDLFGV 420 QICGAYPDTV ARAVELIDRE CEVDFIDINM GCPIDIVVNK GAGSSLLTKP MRMKNIIQSA 480 SATVDKPVTV KVRTGYFEGR NRIDSLISDI SHWGASAVTI HGRSRQQRYS KLADWDYIYQ 540 CARKAPDALQ VLGNGDVFSY LDWNKHMSEC PELSASMIAR GSLIKPWIFT EVKEQRHWDI 600 SSGERLNILK DFSRFGLEHW GSDTKGVETT RHFLLEWLSY AYRYIPVGLL DVIPQRLNWR 660 QPSYCGRDDL ETLMASDSAA DWVKISELLL GKVPDGFTFA PKHKSNAYDK AENG*

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence Send to blast

MDGDGVACST EVVVVVEEEE ERVAAEADSL NNKAIEKEEK DVVEEVVRIQ LTTEELIAKS  60
IAPVKTQYLR PPPPRSKDGG EGIDKKSVSS NLIKEKKSKR QLKRERQQEQ KSALHICAEV  120
AKAGNVGACR YGLKCRFSHD LEAFKVQKPA DIEGTCPFLN YEGPCPYGLA CRFSSTHRLE  180
VTAESSEFQK KTSEVNGLKK DVQKLLWKNK MSFPKADDQL KVLGLLNKSK TKDAEVKENA  240
GDEPVLNGSY ADCEVIDLGD DVISDSVSTK DCCPEVPVEE GILDNAVAVD DSQPSKKAKI  300
AVIDNCGSNE KDNGLDSLKE GSQDIHAQTE VQVIPTDTYY CESDKSLKIH PREKKLIDFR  360
GKLYLAPLTT VGNLPFRRVC KTLGADITCG EMAMCTNLLQ GQASEWALLR RHSSEDLFGV  420
QICGAYPDTV ARAVELIDRE CEVDFIDINM GCPIDIVVNK GAGSSLLTKP MRMKNIIQSA  480
SATVDKPVTV KVRTGYFEGR NRIDSLISDI SHWGASAVTI HGRSRQQRYS KLADWDYIYQ  540
CARKAPDALQ VLGNGDVFSY LDWNKHMSEC PELSASMIAR GSLIKPWIFT EVKEQRHWDI  600
SSGERLNILK DFSRFGLEHW GSDTKGVETT RHFLLEWLSY AYRYIPVGLL DVIPQRLNWR  660
QPSYCGRDDL ETLMASDSAA DWVKISELLL GKVPDGFTFA PKHKSNAYDK AENG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	8e-28	359	606	27	266	tRNA-dihydrouridine synthase B
6ei9_B	8e-28	359	606	27	266	tRNA-dihydrouridine synthase B
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Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM399220	0.0	KM399220.1 Aquilegia coerulea FMN-linked oxidoreductases superfamily protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263932.1	0.0	PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Swissprot	Q7XT07	0.0	DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A2G5CAP2	0.0	A0A2G5CAP2_AQUCA; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	Aquca_074_00033.1	0.0	(Aquilegia coerulea)

Link Out ? help Back to Top
Phytozome	Aqcoe3G086400.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]