PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G089100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 621aa MW: 68822.6 Da PI: 7.0096

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G089100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00083	478	500	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ksF + L H+r+H Aqcoe3G089100.1.p 478 HQCKICNKSFHSGQALGGHQRSH 500 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.11E-5	424	500	No hit	No description
PROSITE profile	PS50157	11.053	425	452	IPR007087	Zinc finger, C2H2
SMART	SM00355	4.8	425	447	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.0E-7	425	448	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	427	447	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.4E-10	477	501	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.221	478	500	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.018	478	500	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	480	500	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MMDVDDKKGK KKLFPEEDEK IDTATSTSTS TSSSTTTTTT TTTAASASDM MMDVVDDDDG 60 KKEKKKLSPE EEEVEKLRIE KLVTSCTYHR WTQNQYTLRL DFLKKGNKIV KKKNSAGDSN 120 SICRDENQLL PPRKRVLTEV DAEKHHHHHD DHGKLLENQN KMKFIISLKK KQPDENPNEE 180 NIQSEKSSHG HRRNHPRETL SPSVTEMISS PYSSSSPSRS VTSADSMKNS SSQNLVISST 240 ESKSGGLELG LSQWSKKEKR GRRALTKEEV ERKKLKRDGA FTGNKQQAPP LLHEKDLQGV 300 GDQDIVMAGG KQLEKLETEA VPVLTSTVET QWKDGEVEVA NNMATSEVIA INSKVGLDDE 360 KVVNTSAGSD QYKHDGIPGN SNMLLHDVLR KEFTLENKVK AAGGINAMNI RQKKSLITTS 420 IDGTYWCSEC NKCFPSHQAL GGHKSSHSIK KTKDVPALTN GAAVEHDARY GLDLIPTHQC 480 KICNKSFHSG QALGGHQRSH YIQPMVPVGK EYTLDHKIVP MAKDFIIDLK SAPEVKETTF 540 ELKPAPVVKE TTFELKPAPV VKETTFELKP APVELNFDIR SMALERDFDL NELPAMMEGE 600 EVDIACTALS ISTPQPIQAA *

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MMDVDDKKGK KKLFPEEDEK IDTATSTSTS TSSSTTTTTT TTTAASASDM MMDVVDDDDG  60
KKEKKKLSPE EEEVEKLRIE KLVTSCTYHR WTQNQYTLRL DFLKKGNKIV KKKNSAGDSN  120
SICRDENQLL PPRKRVLTEV DAEKHHHHHD DHGKLLENQN KMKFIISLKK KQPDENPNEE  180
NIQSEKSSHG HRRNHPRETL SPSVTEMISS PYSSSSPSRS VTSADSMKNS SSQNLVISST  240
ESKSGGLELG LSQWSKKEKR GRRALTKEEV ERKKLKRDGA FTGNKQQAPP LLHEKDLQGV  300
GDQDIVMAGG KQLEKLETEA VPVLTSTVET QWKDGEVEVA NNMATSEVIA INSKVGLDDE  360
KVVNTSAGSD QYKHDGIPGN SNMLLHDVLR KEFTLENKVK AAGGINAMNI RQKKSLITTS  420
IDGTYWCSEC NKCFPSHQAL GGHKSSHSIK KTKDVPALTN GAAVEHDARY GLDLIPTHQC  480
KICNKSFHSG QALGGHQRSH YIQPMVPVGK EYTLDHKIVP MAKDFIIDLK SAPEVKETTF  540
ELKPAPVVKE TTFELKPAPV VKETTFELKP APVELNFDIR SMALERDFDL NELPAMMEGE  600
EVDIACTALS ISTPQPIQAA *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5C9K4	0.0	A0A2G5C9K4_AQUCA; Uncharacterized protein
STRING	Aquca_074_00060.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	4e-16	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G089100.1.p