PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G109600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 739aa    MW: 86138.4 Da    PI: 8.9
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G109600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.75.9e-1649143190
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                        ++Y++Y+ + GF v k++s+k+    +++t+  +vCs  g+ ++  ++   ++k+r ++++ r +C+a++k++++  + +w+v +++ eHnH
  Aqcoe3G109600.1.p  49 EYYEKYGVSKGFLVLKRSSQKTwVCCDTVTTILYVCSHFGTYNKPVNEsvpKQKQRPNTSTMRGECQAQMKINLNPkTLEWVVRQFHDEHNH 140
                        69***************999997677889***********9999988867666666677778899**********9899************* PP

               FAR1  88 ela 90 
                        +++
  Aqcoe3G109600.1.p 141 SFV 143
                        986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-1349143IPR004330FAR1 DNA binding domain
PfamPF105513.6E-34241334IPR018289MULE transposase domain
Gene3DG3DSA:1.10.1820.108.7E-4421488IPR016149Casein kinase II, regulatory subunit, alpha-helical
PROSITE profilePS509669.606520556IPR007527Zinc finger, SWIM-type
PfamPF044342.9E-5527555IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-5531558IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005956Cellular Componentprotein kinase CK2 complex
GO:0008270Molecular Functionzinc ion binding
GO:0019887Molecular Functionprotein kinase regulator activity
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
YCAMEEEVFA SKKEKSLAVE FGSPNKDAND TLMTPYIGMT FKTSEDAKEY YEKYGVSKGF  60
LVLKRSSQKT WVCCDTVTTI LYVCSHFGTY NKPVNESVPK QKQRPNTSTM RGECQAQMKI  120
NLNPKTLEWV VRQFHDEHNH SFVSPSKKML LKTNRKMPEA AKNMVEMFRK ENLPVNKVKS  180
IFGGDNIGFN NRACWNHLRD VRQLENPQFY YAIQCDGERR AVNFFWVDAR SRMSYQQFGD  240
VVTFDTTYKT NKYKLPFAPF TGVNHHFQTI QFGCALLQDE TENSFIWLFE TWKNAMGGVA  300
PVFLITDSDL AMRAAIPKVF PNTRHRLCYW HIKRKFGEKL GHVYFKKSGF KKDMKKCLKK  360
TFRVVDFEKS WGEVMIKYEL TNNAWLEGLY QDRVVWVPVY NCTTFFTGMS STGRSEGINA  420
FFKDYINSKT DLKEFVEKYE QALKRIEAKE RDEDYESEQK YRLFVEKSYI LYHARNIYTR  480
KMFEKFKTQW LSIDMYKSSV VSDDPNTHIV TYKRGDTDHW MVTLDQQTLE GTCECHLFEF  540
IGIPCTHILK VFSKLDLDEI PEFFIKRRWL KGANIFRSAD KVEFISQEHT EVLRLNHLCQ  600
EATQWACIAY KTEEGYKMFL DGIKELGKKV SQIKQSKVDD GETQVNGSIN QPPQILLDPH  660
VSLMKGRNKD GKGNGNCSPT NNDERYKSPI EISQDKKKRK CTCCNTFANH NSRTCPKRLK  720
VNDQGNTVIN ETFDLSCE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021815267.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A251QDD00.0A0A251QDD0_PRUPE; Uncharacterized protein
STRINGXP_008219733.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-122FAR1-related sequence 5