PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G115700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HD-ZIP
Protein Properties Length: 283aa    MW: 31939.4 Da    PI: 4.3588
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G115700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-2067120356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t+eq++ Le+ F+ ++++  e+++eLAkklgL+ rqV +WFqNrRa++k
  Aqcoe3G115700.1.p  67 KKRRLTAEQVHLLEKSFAAENKLEPEQKTELAKKLGLQPRQVAIWFQNRRARWK 120
                        56789************************************************9 PP
2HD-ZIP_I/II129.81.1e-4166157192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl++eqv+lLE+sF +e+kLepe+K+ela++Lglqprqva+WFqnrRAR+ktkqlE+dy++Lk++yd+l ++ +++ ke+e++++e+ 
  Aqcoe3G115700.1.p  66 EKKRRLTAEQVHLLEKSFAAENKLEPEQKTELAKKLGLQPRQVAIWFQNRRARWKTKQLERDYDVLKASYDSLLSNYDTIVKENEKIKSEVV 157
                        69*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.81562122IPR001356Homeobox domain
SMARTSM003894.3E-2065126IPR001356Homeobox domain
CDDcd000862.12E-1967123No hitNo description
SuperFamilySSF466895.99E-2067132IPR009057Homeodomain-like
PfamPF000468.3E-1867120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-2268129IPR009057Homeodomain-like
PRINTSPR000311.4E-693102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000311.4E-6102118IPR000047Helix-turn-helix motif
PfamPF021831.5E-16122163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDTGGRYLFD GSCHGSMFVL GNGSDSIFRG SRSLLNMEEN PNKKRAFFSY AEEFMEEEFY  60
DEQLPEKKRR LTAEQVHLLE KSFAAENKLE PEQKTELAKK LGLQPRQVAI WFQNRRARWK  120
TKQLERDYDV LKASYDSLLS NYDTIVKENE KIKSEVVSLA EQLKAKDVTS MGVELCQKMD  180
QLHPTKDVDI VAVHLCVKAE DYLSSGSGGS AVVDEDGPQL VDSGDSYFPN EDYQIYMGQV  240
DGVQSEEDDG SDDGQSYFSN VFAGAVQQQE VTEPSLGWWG WS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018823115.11e-124PREDICTED: homeobox-leucine zipper protein HAT5
RefseqXP_021299162.11e-124homeobox-leucine zipper protein HAT5
SwissprotQ022832e-84HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2G5DAC00.0A0A2G5DAC0_AQUCA; Uncharacterized protein
STRINGAquca_025_00286.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-80homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]