PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G123600.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Dof

Protein Properties

Length: 313aa MW: 34759.4 Da PI: 6.7411

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G123600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	3.1e-39	54	113	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+a kcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknk++ Aqcoe3G123600.1.p 54 HEQAPKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNIPVGGGCRKNKRV 113 68899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51020	8.581	1	61	IPR009465	Spondin, N-terminal
ProDom	PD007478	9.0E-29	52	112	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	56	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	58	112	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	60	96	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MGLTSLQICM DTSDWLQGVN HEINGTNSSS PSGDMDNMVT ISKSMEDKGP RPQHEQAPKC 60 PRCDSTHTKF CYYNNYSLSQ PRYFCKTCRR YWTKGGSLRN IPVGGGCRKN KRVPAKKSNE 120 KPLHDHYSSS SSLSHGETDL HLSQLSHLNN FFGNSGHGVE NINFMERGNN AVTENSSRHV 180 EFTESKFDAI LGNIRSHDFM GPNDLSLVGG LGDVGASYGF THNFHELCST FGISLNENNG 240 FSMETNQRPM LSFESDQDPN ATELKPKKSL SLDWQEHGCS EIERDSIGRL DSLGSWSNMM 300 DGYRSSGKNT SM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010243051.1	1e-132	PREDICTED: dof zinc finger protein DOF5.6-like
Swissprot	Q9FM03	2e-40	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	A0A2G5DBG8	0.0	A0A2G5DBG8_AQUCA; Uncharacterized protein
STRING	Aquca_025_00350.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	4e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G123600.1.p

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]