PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G131400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARR-B
Protein Properties Length: 603aa    MW: 67252.7 Da    PI: 5.0514
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G131400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.66.7e-24209262155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r+ W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Aqcoe3G131400.1.p 209 KARVLWSVDLHQKFVNAVDQI-GLDKVGPKKILDLMNVPWLTRENVASHLQKYRL 262
                        689******************.********************************8 PP
2Response_reg82.41.4e-27281361109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+ek+  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + +
  Aqcoe3G131400.1.p  28 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLAREALNLLREKKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGV 117
                        89*********************.***************999999**********************6644.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        + Ga d+l Kp+ ++el +
  Aqcoe3G131400.1.p 118 QHGACDYLLKPVRMKELKN 136
                        ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.9E-4425159No hitNo description
SuperFamilySSF521725.12E-3625149IPR011006CheY-like superfamily
SMARTSM004481.7E-3226138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.87927142IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2428136IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.98E-3029142No hitNo description
SuperFamilySSF466892.15E-16207266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-27208267IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-22209262IPR006447Myb domain, plants
PfamPF002495.5E-6213261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MMENGFGSPS PSPRTYNTND SFPAGLRVLV VDDDPTWLKI LEKMLKKCSY EVTTCCLARE  60
ALNLLREKKD GFDIVISDVN MPDMDGFKLL EHVGLEMDLP VIMMSVDGET SRVMKGVQHG  120
ACDYLLKPVR MKELKNIWQH VLRKKIHEVK DIESYECVED VPMMINGSNI FDDGQSLSVS  180
DFSSVKKRKD MENKDHDNQD FNDLLSGKKA RVLWSVDLHQ KFVNAVDQIG LDKVGPKKIL  240
DLMNVPWLTR ENVASHLQKY RLYLSRLQRQ NEPITSFGVI KQSDFTTNDP PTCFGLQGSA  300
TMHQNNASGC NFGYAGNNIV VQDSLDMPEG DSESIFSGMT VREPIKASTG DLPDGQRRNG  360
GSRNGPNHSC GSLGIDVNLF GSTTHQQKSW SKEIPMIMFP QQIKKEHESQ GHTLLSSSGS  420
QIHVQFDNPR FLSSTSSGTC NSEINKVSTS ETKRLCTEYR SSYVNSISPV AHTIGSVSLQ  480
SEIGMGDLRD FGPISTSTGS TSTKSNVFDQ KCTSNLGFDP QYLLCGSGAS LQPSHETLQV  540
CSLQDYEYVE NVELSNVEFL DYHDLELFTE LPSQSYDRLK FSCEYLSDSL EYPIINEGLF  600
IT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-19208267463ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251342.10.0PREDICTED: two-component response regulator ORR26-like
TrEMBLA0A2G5CGI10.0A0A2G5CGI1_AQUCA; Uncharacterized protein
STRINGAquca_056_00105.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-121response regulator 11