PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G148000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25485.7 Da    PI: 9.6372
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G148000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.35.6e-101149341
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                        en+  r   ++kR++ +lKK   LS+ C+++++ ii +
  Aqcoe3G148000.1.p 11 TENDAARRSAYIKRKKVLLKKVTKLSIVCGVDACAIING 49
                       6999*******************************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-8161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.376147IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-16390IPR002100Transcription factor, MADS-box
PfamPF003194.9E-91249IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVRKKMKLGF TENDAARRSA YIKRKKVLLK KVTKLSIVCG VDACAIINGC PYDHKPEVWP  60
SPQMAKDVVT RFNNIPEIEK NNEMVDMHIS YLEERVAELK KQVLKKEAQN RDLEITTLMF  120
KALNTGGLEA VKPEGVNDLV RVIEKHGKDI KRQIKSLKRR AEIEVGEMVE DVVPRESLFM  180
ERLMNPPAGQ QPPPLPPNGY YPGDGSVMLP VGGYNGFYGT PNGFHP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802380.0JX680238.1 Aquilegia coerulea MADS-box protein AGL81 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CDG01e-165A0A2G5CDG0_AQUCA; Uncharacterized protein
STRINGAquca_061_00072.11e-166(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-29AGAMOUS-like 80