PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G153600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 278aa    MW: 29250.2 Da    PI: 8.5019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G153600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035106128123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC+ C+ksFs+   L  H  +H
  Aqcoe3G153600.1.p 106 HKCTVCNKSFSSYQALGGHKASH 128
                        79**********99999998887 PP
2zf-C2H213.60.00019179201123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C+ksF++   L  H r+H
  Aqcoe3G153600.1.p 179 HECSICHKSFPSGQALGGHKRRH 201
                        78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-8105128No hitNo description
PfamPF139122.6E-13106130IPR007087Zinc finger, C2H2
PROSITE profilePS501579.515106128IPR007087Zinc finger, C2H2
SMARTSM003550.011106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-8174201No hitNo description
PfamPF139121.3E-13178203IPR007087Zinc finger, C2H2
SMARTSM003550.033179201IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515179201IPR007087Zinc finger, C2H2
PROSITE patternPS000280181201IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAIETLNSPT AVPPPSSSFR YQELTDTKLH SIEPWVKRKR SKRPRHETPS TSSSSPSPPH  60
QPTEEEYLAY CLIMLARGGA GSTTSQPPPL LPLAPPTKGV FLVDQHKCTV CNKSFSSYQA  120
LGGHKASHRK LSVSIIPSED HHHNQVQAAV SNSSASASTT STTTASVIST VNQSSGRAHE  180
CSICHKSFPS GQALGGHKRR HYDGGAAATT TNSTGGANGN GGNVSPNEPA SRNESASRNE  240
PSSSFTVGSR AELELIVQLD LNFELGSVSN EPSSSIP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2539107e-56AC253910.1 Aquilegia coerulea clone COL07-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5C3K81e-154A0A2G5C3K8_AQUCA; Uncharacterized protein
STRINGAquca_105_00013.11e-155(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.14e-33zinc-finger protein 1