PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G160100.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 516aa    MW: 56861.6 Da    PI: 5.9338
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G160100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2253.5e-692975041211
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsP 89 
                        lv+lLl+cAeav+++d   a+++L +l+  ++p gd+mqR+a++f  AL+arla    + ++++++ p ++  ++ns e+l++++++++++P
  Aqcoe3G160100.2.p 297 LVHLLLACAEAVAKEDYMSARRYLHQLNRVVTPLGDSMQRVASCFSDALSARLAAtltTNPNISNSKPFTPF-PSNSREVLKIYQILYQACP 387
                        68***************************************************9943233455555555555.478**************** PP

               GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                        ++kf+h+t NqaI ea+e eervHiiD+di qG QWpa++q LasR++g+pslRiTgvg       e+++etg+ L+++A++l++pfef++ 
  Aqcoe3G160100.2.p 388 YIKFAHFTSNQAIFEAFEAEERVHIIDLDILQGYQWPAFMQGLASRSNGAPSLRITGVGF----PPEAVRETGRCLNELANSLKIPFEFHA- 474
                        ************************************************************....99*************************. PP

               GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlh 211
                        v ++le+l++++++ + gEalaVn+v +l 
  Aqcoe3G160100.2.p 475 VGEQLENLKPHMFHRRVGEALAVNSVNRLP 504
                        7************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.789271515IPR005202Transcription factor GRAS
PfamPF035141.2E-66297504IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MMNSHCGNTG SSTPLKKEKS CSKLQQISPT TSVSESNNIA TSTEFEHSIS NSLNLNFQSL  60
KFEADDDEVQ SPNSSIWEAL FGDQNDSCTD FMISSPRRTP DHMISSPRRN TDYMISSPKR  120
NPAGHVISSY NYFQPTPGPN MLGCSSPSQY GAYNIIQKGK AQSPLHKVFP STNQFGDASL  180
PALDEFTNDY QIDSFGAYST LKMTGVSCPP ESFDTPQTLG AMLSYSPLPT SRFCGSLSEV  240
GVQGGLQMSQ ERDVYQQSSF ATLQQTQERQ QQQNLDQSLL ASLSTGTDQE QDSGLQLVHL  300
LLACAEAVAK EDYMSARRYL HQLNRVVTPL GDSMQRVASC FSDALSARLA ATLTTNPNIS  360
NSKPFTPFPS NSREVLKIYQ ILYQACPYIK FAHFTSNQAI FEAFEAEERV HIIDLDILQG  420
YQWPAFMQGL ASRSNGAPSL RITGVGFPPE AVRETGRCLN ELANSLKIPF EFHAVGEQLE  480
NLKPHMFHRR VGEALAVNSV NRLPPCPYKL SGVPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-4330449825217Protein SCARECROW
5b3h_D3e-4330449825217Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021641856.10.0scarecrow-like protein 21
SwissprotG7L1661e-156RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2G5DER30.0A0A2G5DER3_AQUCA; Uncharacterized protein
STRINGAquca_021_00065.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-40RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]