PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G167000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 190aa MW: 21303.9 Da PI: 4.7712

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G167000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.6	4.5e-13	72	165	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 f v+++s v+ +lvlp k ++ + + + ++ ++ + W++++i ++ s + + +GWk+Fv +n+Lk+gD +vF+l+ + ++ Aqcoe3G167000.1.p 72 FHVVFLKSQVSGIYQLVLPTKMS-SIL-P--QAVVPVVLTRLDKNWKMNYIGEGLS-HKRFDSGWKNFVIDNNLKVGDGCVFELSeCSkDCL 158 66778899999999999999976.663.2..334556777889*****654444.4579********************986555777 PP ..EEEEE CS B3 91 elvvkvf 97 +++v+++ Aqcoe3G167000.1.p 159 KFRVQIL 165 7777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.3E-17	66	166	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.04E-17	67	165	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.17E-16	70	165	No hit	No description
PROSITE profile	PS50863	11.575	72	168	IPR003340	B3 DNA binding domain
SMART	SM01019	9.8E-10	72	164	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.1E-11	72	164	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MDFSACDTGN EGHLKSSQEE IIPTSQDRNC EGNMKQNQTH GCDSQHQSPP QDHTSSISDE 60 EHWPLSDDKP YFHVVFLKSQ VSGIYQLVLP TKMSSILPQA VVPVVLTRLD KNWKMNYIGE 120 GLSHKRFDSG WKNFVIDNNL KVGDGCVFEL SECSKDCLKF RVQILEGDFP SELLDRVDGK 180 CSDTPILID*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028100303.1	2e-47	B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A2G5ESC4	1e-111	A0A2G5ESC4_AQUCA; Uncharacterized protein
STRING	Aquca_005_00533.1	1e-112	(Aquilegia coerulea)

Link Out ? help Back to Top
Phytozome	Aqcoe3G167000.1.p