PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G168000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 362aa    MW: 41588.4 Da    PI: 10.2651
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G168000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.6e-1518107199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffk++   ++  ++ l++p  f+++++gk   +++ +l+ + g s  vk+  +k  + y++++GW++Fvk n L+ gD ++F+++g s f  
  Aqcoe3G168000.1.p  18 FFKIM---MADFTDTLRIPLAFTKRFEGK--IHRECILKIPIGTSCVVKV--KKIEDDYFFRTGWRRFVKKNLLEFGDLLIFTYVGCSIF-- 100
                        66777...44556779**********888..6669***************..********************************997777.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                        +vk+++k
  Aqcoe3G168000.1.p 101 RVKIYDK 107
                        9999887 PP
2B350.15.1e-16240337498
                        E-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   4 vltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        + +++ + ++g + +p +f+ ++       g+++++  +++  ++gr+W v++  + ++++ ++  GW+ Fv +n LkegD++ F+ ++ +e
  Aqcoe3G168000.1.p 240 IVLSPTYISKGFVNFPCRFV-RYltntslPGNTKRQLNVRFVILDGRKWPVQV--NCSKNKSYICHGWSAFVAENSLKEGDICFFEIIKAEE 328
                        55666777777888999999.5559999966667888****************..77777778889********************999999 PP

                        E..EEEEE- CS
                 B3  90 felvvkvfr 98 
                           +v+++r
  Aqcoe3G168000.1.p 329 LDIKVSIYR 337
                        999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-2011110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-2213110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.81415108IPR003340B3 DNA binding domain
CDDcd100171.91E-1516106No hitNo description
PfamPF023627.4E-1318107IPR003340B3 DNA binding domain
SMARTSM010195.7E-1118108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-19230334IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-18231331IPR015300DNA-binding pseudobarrel domain
PfamPF023624.2E-14237337IPR003340B3 DNA binding domain
CDDcd100177.80E-15237337No hitNo description
SMARTSM010195.3E-8237339IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647237339IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MATEPTTRRR VKKKKPSFFK IMMADFTDTL RIPLAFTKRF EGKIHRECIL KIPIGTSCVV  60
KVKKIEDDYF FRTGWRRFVK KNLLEFGDLL IFTYVGCSIF RVKIYDKTGC EKDMKKCLEQ  120
KKNNQDEQKN CRRAESVDAH AEQVTCEGVK GNKQSKLATE RNDDTISSKE VHLLLKSTKR  180
KDGLQSTIQK ESLGLPTVKQ HLHTSASAKR RRCVASREML LNKAIEAAKK FKSENPFCRI  240
VLSPTYISKG FVNFPCRFVR YLTNTSLPGN TKRQLNVRFV ILDGRKWPVQ VNCSKNKSYI  300
CHGWSAFVAE NSLKEGDICF FEIIKAEELD IKVSIYRVLD NVKPLLLQQS EMTATNDLES  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1920234216146B3 domain-containing transcription factor VRN1
4i1k_B6e-1920234216146B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-32B3 family protein