PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G168100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 573aa    MW: 64641.2 Da    PI: 5.3443
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G168100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.33.3e-144755671398
                        TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-...........TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt...........kGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         g l++  +fa+++  + ++s+   + d+s r+W+v ++y+k+  r++++           +GWke v an+Lkeg ++ F+l+++++ +l+
  Aqcoe3G168100.1.p 475 GGYLYIQMDFADKYL-P-KRSTNACILDSSERTWSVGYNYKKH--RTYFSkhlegrracfnRGWKEVVVANELKEGYVCAFELIDEKNVKLK 562
                        56799******9995.3.37789***************66444..4445556667777777***********************99999999 PP

                        EEEE- CS
                 B3  94 vkvfr 98 
                        +++++
  Aqcoe3G168100.1.p 563 ISILS 567
                        99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-71171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-111395IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.71790IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-16457561IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-18457563IPR015300DNA-binding pseudobarrel domain
CDDcd100177.27E-14462567No hitNo description
PROSITE profilePS5086311.279463569IPR003340B3 DNA binding domain
SMARTSM010196.4E-8464569IPR003340B3 DNA binding domain
PfamPF023629.3E-13473567IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MFSQIQMGKK QKPKPSFFKI MFGDFTHQLQ IPPKFVLHYN DILPRKLLLE VSCGDFWVVK  60
LKKKKDEMFF GEVFRSLGNS KFNVKIYGKN CCEKERILEG RKIDQCRSCE KKAKGNVGMG  120
LTLTQDDQLC DSKEPKFDKE YHVDDQKERE DEVSLEILGE DWCKTGAPLR NEVFNEGKKL  180
ETSIVYKEVI ALCKSKLKSN DACQIEKKDN RHVSCIGRSR FKRSRVSPNK LKKRKIELSV  240
SKDACSTDEE VVSVSKDADS SDEDVVSVSK DADSSDEEVE LSSNKDAEST DAEVDLSVSI  300
DADSSDEEVR FKVSKDANST DEKVDSTDEE VGLSISEDVD STDEEVELSA SEDTDSTYEV  360
NGLSVSKDVN STDDEVEIGS SEDADSTNDE VQLYSSKHAN STDKEVQLHG FEGRTRSYHR  420
AESSPQVATN YRNFSGSKRK PVTMQATGQS TNAASGFKSK YPSFIVHLGR AYVNGGYLYI  480
QMDFADKYLP KRSTNACILD SSERTWSVGY NYKKHRTYFS KHLEGRRACF NRGWKEVVVA  540
NELKEGYVCA FELIDEKNVK LKISILSEKV IK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5ESD80.0A0A2G5ESD8_AQUCA; Uncharacterized protein
STRINGAquca_005_00543.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-11B3 family protein