PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G168200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 460aa    MW: 52784.3 Da    PI: 9.2617
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G168200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.4e-17693197
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                       ffkv+     +++ +l +p  f+ +++ +   + +l le+  g+ W+vkl  +k +++++l +GW  Fvk+n L+ gDf+vF+  g s+f  +v
  Aqcoe3G168200.1.p  6 FFKVM--LGDFTH-QLHIPPAFVLHYNDI--LPEKLLLETFLGECWDVKL--KKEKNEFFLCEGWTIFVKDNSLEFGDFLVFRSLGGSKF--NV 90
                       66666..556665.5********999877..6778***************..*******************************7776777..77 PP

                       EEE CS
                 B3 95 kvf 97
                       +++
  Aqcoe3G168200.1.p 91 RIY 93
                       776 PP
2B353.15.9e-17355457199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy......rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        ff++ ++s + + g +++p +fa+++  + +es+ + ++d+s r W  +++y      r +++r  l+kGWk  v an+L+eg ++ F+l++
  Aqcoe3G168200.1.p 355 FFTIRLHSTYVNGGFMYIPMDFADTYL-P-KESTNVCIMDSSERAWPAQYSYkrylsnRWQRCRACLSKGWKALVVANKLREGYVCAFELIE 444
                        788999999999***********9995.3.36789***************9998887755666799*************************9 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         ++ +l++++++k
  Aqcoe3G168200.1.p 445 VENMKLKLSILKK 457
                        9999999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.62396IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-23498IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-18593No hitNo description
Gene3DG3DSA:2.40.330.105.7E-22598IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.0E-12696IPR003340B3 DNA binding domain
PfamPF023627.5E-15693IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-21349456IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-19349457IPR015300DNA-binding pseudobarrel domain
CDDcd100177.68E-17354456No hitNo description
SMARTSM010195.2E-14355458IPR003340B3 DNA binding domain
PfamPF023627.7E-16355457IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112355458IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MSQYSFFKVM LGDFTHQLHI PPAFVLHYND ILPEKLLLET FLGECWDVKL KKEKNEFFLC  60
EGWTIFVKDN SLEFGDFLVF RSLGGSKFNV RIYGKHCCEK VGIPKRRKID LCMSCKRKVN  120
HRNVYMVLVD EDQLCDSKDQ YKVDDEEERE DEVSLQILGD DWCKTGASPR KGVFNKGKEL  180
AKCNPKKNLS STRSSFRTKS NNLSKLKLKS NDACRIKKKD NKCVSWIGQS SVKRSKVTLN  240
KMKKRKIERG IIPLADSKST DEEIELSSSQ DAESTDEETE LGSNKDAEST DEEDQSHGFE  300
QRNLDSLHHD YQKAESSPRL GTKYLNLSGR RRKPATMQGT GRSNAASGFK SKYPFFTIRL  360
HSTYVNGGFM YIPMDFADTY LPKESTNVCI MDSSERAWPA QYSYKRYLSN RWQRCRACLS  420
KGWKALVVAN KLREGYVCAF ELIEVENMKL KLSILKKGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1232445617141B3 domain-containing transcription factor VRN1
4i1k_B2e-1232445617141B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5ESG40.0A0A2G5ESG4_AQUCA; Uncharacterized protein
STRINGAquca_005_00544.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.19e-18B3 family protein