PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G169700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family G2-like
Protein Properties Length: 355aa    MW: 40215.6 Da    PI: 8.2533
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G169700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-32181234255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Aqcoe3G169700.1.p 181 PRMRWTTTLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 234
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.14E-16178234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28179234IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-23181234IPR006447Myb domain, plants
PfamPF002491.1E-7182233IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPSTR PTTSGWRRTD EEMDLGFWRR ALDSSSTTKV SADTCFELSL  60
ANPRISESNN NSNHLQHQLH HNHHHANLIH THQQNLNNHH HHQQQQHIHQ QGLHQDLAFL  120
RPIRGIPVYH NPPSFSFVQQ HPFDSPASTT TTTSSTSFQS QGLMRSRFLS RFPAKRSMRA  180
PRMRWTTTLH NRFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTVKTTDR  240
PAASSGHSDG FENGSAGEIS NEIMLDMQNP LGSDLSTPQG RPNMNQDQDY CSLWSNSSSR  300
EAWLHGKTKD HEGRAPSFEK DIDPKCISIE RISELNSTTS PKRPNLEFTL GRPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16182236357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16182236357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16182236357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16182236357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663129.11e-154PREDICTED: probable transcription factor KAN2 isoform X1
SwissprotQ9C6161e-86KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A2G5ESG00.0A0A2G5ESG0_AQUCA; Uncharacterized protein
STRINGAquca_005_00557.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-67G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]