PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G179000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22776.1 Da    PI: 10.501
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G179000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF862.2e-27958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien++nrqvtfskRrng+lKKA+ELSvLCdaev ++ifs++gk   ++
  Aqcoe3G179000.1.p  9 KRIENTTNRQVTFSKRRNGLLKKAFELSVLCDAEVGIVIFSPSGKACQFA 58
                       79******************************************988887 PP
2K-box78.91.3e-26841731099
              K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         +++ae +++e++ Lkk +++++ e +h+ Ge+L sL++keL+qLe+qL+ ++++iRs+K ++l e+i+ +++k+k+lqeen +L+k+l 
  Aqcoe3G179000.1.p  84 RSRTAEFWKTEIEDLKKTVDKMEAEDKHFAGEELVSLDVKELKQLERQLKIGVERIRSRKRRILSEHINLMKRKQKALQEENSYLQKRLH 173
                        567799********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.286161IPR002100Transcription factor, MADS-box
CDDcd002656.52E-39274No hitNo description
SuperFamilySSF554551.27E-31277IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003199.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-293859IPR002100Transcription factor, MADS-box
PfamPF014865.7E-2485172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.3988178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRGKVELKR IENTTNRQVT FSKRRNGLLK KAFELSVLCD AEVGIVIFSP SGKACQFASQ  60
DMDRTIARYR SDSGLPPSNY DQHRSRTAEF WKTEIEDLKK TVDKMEAEDK HFAGEELVSL  120
DVKELKQLER QLKIGVERIR SRKRRILSEH INLMKRKQKA LQEENSYLQK RLHEVDLSSR  180
NVRGKTVGSF QHMQGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A5e-23187180MEF2 CHIMERA
6bz1_B5e-23187180MEF2 CHIMERA
6bz1_C5e-23187180MEF2 CHIMERA
6bz1_D5e-23187180MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026385965.11e-94MADS-box transcription factor 14-like isoform X2
RefseqXP_026461003.11e-94MADS-box transcription factor 14-like isoform X2
TrEMBLA0A097C2625e-84A0A097C262_9ROSI; MADS-like protein
TrEMBLD7SH011e-83D7SH01_VITVI; Uncharacterized protein
STRINGVIT_17s0000g01230.t012e-84(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.15e-51MIKC_MADS family protein