PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G180200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SBP
Protein Properties Length: 97aa    MW: 11710.6 Da    PI: 11.715
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G180200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP105.34.5e-331178976
                       ---TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                SBP  9 adlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                       +dls++++yhrrh+vC+ hsk+p+ lv+g+eqrfC+q srfh l efDeekrsCr+rL++hn+rrr+ 
  Aqcoe3G180200.1.p 11 SDLSKCRDYHRRHRVCKSHSKTPNLLVRGQEQRFCKQRSRFHLLVEFDEEKRSCRQRLDGHNRRRRRL 78
                       69****************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114124.692178IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-291181IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.2E-241165IPR004333Transcription factor, SBP-box
PfamPF031102.0E-231277IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MLGRWLQLRV SDLSKCRDYH RRHRVCKSHS KTPNLLVRGQ EQRFCKQRSR FHLLVEFDEE  60
KRSCRQRLDG HNRRRRRLPL EGLFCPPKSV ICRQQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2010771784squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16077KRSCRQRLDGHNRRRRRL
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631025.19e-32squamosa promoter-binding-like protein 16
SwissprotQ0JGI13e-30SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLA0A2G5CRG25e-62A0A2G5CRG2_AQUCA; Uncharacterized protein
STRINGAquca_040_00115.19e-63(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-26SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]