PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G185300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 814aa    MW: 93816.2 Da    PI: 9.1557
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G185300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.54.5e-23110196190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fYn+YAke+GFsvrk ++kk+  n+ei+++++vC k+gk +  +++  +++r+r + r gCkakl v k+ +gk+ vt +++ HnH+l+
  Aqcoe3G185300.1.p 110 EFYNAYAKEAGFSVRKWSEKKN-ANKEIIRKEYVCFKQGKGSLIEDA--EKSRRRGSLREGCKAKLAVAKSGNGKFAVTIFVEGHNHTLS 196
                        6***************999888.8888***************99888..8999999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004643.3E-104299IPR001085Serine hydroxymethyltransferase
SuperFamilySSF533834.61E-104292IPR015424Pyridoxal phosphate-dependent transferase
Gene3DG3DSA:3.40.640.108.7E-44786IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
PfamPF031011.5E-20110196IPR004330FAR1 DNA binding domain
PfamPF105512.9E-33317410IPR018289MULE transposase domain
PfamPF044342.5E-6599627IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.954601633IPR007527Zinc finger, SWIM-type
SMARTSM005750.0016608636IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MMIVQDPYQC LLGNHSQGST KEKYDCCIRR RNRVDMNYVQ GVIPSENFKP LSVMQAVGSI  60
MTNKYSAGYP ETLCQKRALE AFRLVPAKWG ANNLKPQMGQ DFSSLDDVLE FYNAYAKEAG  120
FSVRKWSEKK NANKEIIRKE YVCFKQGKGS LIEDAEKSRR RGSLREGCKA KLAVAKSGNG  180
KFAVTIFVEG HNHTLSTPRK THLLRSHREV SSAQKCLSQQ FSMVNIPTHQ QYNFLGVQAG  240
GFENIGCIQK DLYNYQRDVR KELKGHDAEM FRKYLKSEEE KNPSFTYTID VDDEQRICRV  300
FWADTTSRRD YALYGDVVVF DTTYNTNRYK LILAPLMGVN NHGQTIIFGC AFLSDETIHS  360
FVWLFKQFLQ AMPGDAPKMI ITDQDPAMTN AIAQTLPKTF HRYCSWHILN KFSEKLDAVK  420
YSVYYKKFYN CIWHSKSQEE FDLVWLDLVQ KSGLQDNRWL ESMFEIRFKW VPVYTSHVFS  480
AEMSSSQRAE SSHSFFKKYV QEENSLLDFM VQFDRGLQKQ RHEALIADNK DVIEKPKLKM  540
FHNILVQMVD IYTNEIFFKF QRELLESFNY KFQIISETYT LRLYKTQRKN LEADKGRQVS  600
YEKDLDHVSC SCNKFESMGI PCRHILAYLH KYTDFEKLSS EYILKRWSKS TKSKTVIDHG  660
GMEIVDDKTY FLERSRLIQC CLGVVNKALT SEEAKQILID ALSSAEEKIN LLIASSGSEK  720
KDNYTVDYST SGKRKKMVDC VTDVEMTEQA NCYREPNQAR AKGCGKRFKG GKEKATGSGK  780
KFEGRLCKGC NQRGVGHDIR TCPKLAGVSL SQP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020272573.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G5CKK00.0A0A2G5CKK0_AQUCA; Uncharacterized protein
STRINGAquca_050_00035.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-117FAR1-related sequence 5