PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G192900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Trihelix
Protein Properties Length: 930aa    MW: 103194 Da    PI: 6.3526
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G192900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.92.1e-21837917186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W+ +ev++Li++r em+er++  k ++ lWee+s+k+ ++g++rs+ qCk+ w +l ++y++++++ kk     s+++py+d++e
  Aqcoe3G192900.1.p 837 KWKVEEVKKLIQMRGEMDERFQVVKGRMVLWEEISEKLLRHGINRSSGQCKSLWTSLIQKYEEERRSGKK-----SRSWPYYDEME 917
                        7**************************************************************9999997.....678*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.108.7E-6620270IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.15E-6821435IPR001279Metallo-beta-lactamase
SMARTSM008491.0E-2333230IPR001279Metallo-beta-lactamase
PfamPF127063.6E-1045180IPR001279Metallo-beta-lactamase
PfamPF075211.6E-6375407IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.444830894IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-5830896IPR009057Homeodomain-like
SMARTSM007175.6E-4834896IPR001005SANT/Myb domain
PfamPF138373.8E-18835919No hitNo description
CDDcd122036.65E-23836901No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MEDSVKRKME QFYEGADGPP LRVLPIGGLG EIGMNCMLVG NYDRYILIDA GVMFPDADEL  60
GVQKIIPDTT FIKRWSHKIE AVVITHGHED HIGALPWVIP ALDSHTPIFA SSFTMELIKK  120
RLKEFGIFVQ SRLKIFRTKS KFRAGPFEVE PIRVTHSIPD CSGLVLRCTD GIIFHTGDWK  180
IDESPLDGKV FDREALEELS KEGVTLMMSD STNVLSPGRT ISESVVADSL MRRISAATGR  240
VITTQFASNI HRLGSVKAAA DLTGRKLVFV GMSLRTYLDA AWRDGKAPID PSTLVKVEDI  300
DGYAPKDLLI VTTGSQAEPR AALNLASYGT SHSLKLTKDD VILYSAKVIP GNETRVMKML  360
NRVAELGSTI VMGKNEVLHT SGHGYRGELE EVLRIVKPQH FLPVHGELLF LKEHELLGKS  420
TGIHHTTVIK NGEMLGVSHL RNRKVLSNGF LSLGKENLQL MYSDGDKAFG TSKELCVDER  480
LRIAYDGIIV VSMEILRPQY SDGLFQTSIK GKIKITTRCL WLDKGKLLDS LHTAANAALS  540
SCPVNSPLAH LERTVSEVLR KMVRKCISKR PEVIVFAVEN TVGVLSDELK DRLSGESHMD  600
IGSSASNKVA DGYLRKSKSN GGDNEASRTN SHPDEEIMQT TEGSGSDQRI LSKEDVAMPN  660
SEVVDTSSSG EDSLDDFWKT FLVSSPVEPP MKGQNGSTER KQMELAKDVR SSEEVDTSLS  720
GEDSLDDFWK TFLVSSPDEP QRKGQNGLTE RKQMELAKDV RSSEVVDTSS SGEDSLDDFL  780
KTFLVSSPAE PPMKGQNGST ERKQMELAKD ASGSGIVEPD NSYSPQEASS QSVKRNKWKV  840
EEVKKLIQMR GEMDERFQVV KGRMVLWEEI SEKLLRHGIN RSSGQCKSLW TSLIQKYEEE  900
RRSGKKSRSW PYYDEMEKIF SAHEATETQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A8e-832149119478RIBONUCLEASE J
5a0t_B8e-832149119478RIBONUCLEASE J
5a0v_A8e-832149119478RIBONUCLEASE J
5a0v_B8e-832149119478RIBONUCLEASE J
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1900906RRSGKKS
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058464.10.0ribonuclease J-like isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A2G5CR060.0A0A2G5CR06_AQUCA; Uncharacterized protein (Fragment)
STRINGAquca_040_00045.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]