PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G192900.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Trihelix
Protein Properties Length: 816aa    MW: 90562.8 Da    PI: 6.708
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G192900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.11.8e-21723803186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W+ +ev++Li++r em+er++  k ++ lWee+s+k+ ++g++rs+ qCk+ w +l ++y++++++ kk     s+++py+d++e
  Aqcoe3G192900.2.p 723 KWKVEEVKKLIQMRGEMDERFQVVKGRMVLWEEISEKLLRHGINRSSGQCKSLWTSLIQKYEEERRSGKK-----SRSWPYYDEME 803
                        7**************************************************************9999997.....678*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.103.6E-302156IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.95E-373321IPR001279Metallo-beta-lactamase
PfamPF075211.3E-6261293IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.444716780IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-5716782IPR009057Homeodomain-like
SMARTSM007175.6E-4720782IPR001005SANT/Myb domain
PfamPF138373.2E-18721805No hitNo description
CDDcd122031.36E-22722787No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MELIKKRLKE FGIFVQSRLK IFRTKSKFRA GPFEVEPIRV THSIPDCSGL VLRCTDGIIF  60
HTGDWKIDES PLDGKVFDRE ALEELSKEGV TLMMSDSTNV LSPGRTISES VVADSLMRRI  120
SAATGRVITT QFASNIHRLG SVKAAADLTG RKLVFVGMSL RTYLDAAWRD GKAPIDPSTL  180
VKVEDIDGYA PKDLLIVTTG SQAEPRAALN LASYGTSHSL KLTKDDVILY SAKVIPGNET  240
RVMKMLNRVA ELGSTIVMGK NEVLHTSGHG YRGELEEVLR IVKPQHFLPV HGELLFLKEH  300
ELLGKSTGIH HTTVIKNGEM LGVSHLRNRK VLSNGFLSLG KENLQLMYSD GDKAFGTSKE  360
LCVDERLRIA YDGIIVVSME ILRPQYSDGL FQTSIKGKIK ITTRCLWLDK GKLLDSLHTA  420
ANAALSSCPV NSPLAHLERT VSEVLRKMVR KCISKRPEVI VFAVENTVGV LSDELKDRLS  480
GESHMDIGSS ASNKVADGYL RKSKSNGGDN EASRTNSHPD EEIMQTTEGS GSDQRILSKE  540
DVAMPNSEVV DTSSSGEDSL DDFWKTFLVS SPVEPPMKGQ NGSTERKQME LAKDVRSSEE  600
VDTSLSGEDS LDDFWKTFLV SSPDEPQRKG QNGLTERKQM ELAKDVRSSE VVDTSSSGED  660
SLDDFLKTFL VSSPAEPPMK GQNGSTERKQ MELAKDASGS GIVEPDNSYS PQEASSQSVK  720
RNKWKVEEVK KLIQMRGEMD ERFQVVKGRM VLWEEISEKL LRHGINRSSG QCKSLWTSLI  780
QKYEEERRSG KKSRSWPYYD EMEKIFSAHE ATETQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A4e-5529377138478RIBONUCLEASE J
5a0t_B4e-5529377138478RIBONUCLEASE J
5a0v_A4e-5529377138478RIBONUCLEASE J
5a0v_B4e-5529377138478RIBONUCLEASE J
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1786792RRSGKKS
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_201147.20.0RNA-metabolising metallo-beta-lactamase family protein
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A2G5CR060.0A0A2G5CR06_AQUCA; Uncharacterized protein (Fragment)
STRINGAquca_040_00045.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]