PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G198700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25392.9 Da    PI: 10.026
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G198700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.96.2e-241563149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       krie +  rqvtfskRr+g++KKA+EL++LC+a+ ++i+fs+ gk++ +
  Aqcoe3G198700.1.p 15 KRIEQEDSRQVTFSKRRTGLFKKASELCILCGAQTSIIVFSPAGKVFSF 63
                       79********************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.586767IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-34766IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-30780IPR002100Transcription factor, MADS-box
CDDcd002651.93E-38879No hitNo description
PRINTSPR004049.5E-22929IPR002100Transcription factor, MADS-box
PfamPF003196.7E-251663IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-222944IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-224465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVRKPSMGRQ KIEIKRIEQE DSRQVTFSKR RTGLFKKASE LCILCGAQTS IIVFSPAGKV  60
FSFVHPSVEA VVDRYLSGSP ATNVVVGSVV SLLDAHRGVN QRELTRKHTE LVHQFEAEKK  120
KGEQQQQLKK ANQQNAPWWE GPIENLGLHE LERIQHHMGK LKSRVGNEIS QTAFFPQMSS  180
MNSIEMPDHY ETKPNPNNPA MVPRTYGFTY GGYGSFDRGL TGGFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-16798195MEF2 CHIMERA
6bz1_B2e-16798195MEF2 CHIMERA
6bz1_C2e-16798195MEF2 CHIMERA
6bz1_D2e-16798195MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802310.0JX680231.1 Aquilegia coerulea MADS-box protein AGL70 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245647.17e-63PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G5CSJ11e-168A0A2G5CSJ1_AQUCA; Uncharacterized protein
STRINGAquca_040_00096.11e-169(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-35AGAMOUS-like 62