PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G199100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NF-YC

Protein Properties

Length: 219aa MW: 24538.4 Da PI: 5.5295

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G199100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.5	2.5e-55	41	145	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw++q ie+++df+nh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rsw haeenkrrtl+k+diaaa+trtdif Aqcoe3G199100.1.p 41 QLQMFWSYQrqeIEQVNDFRNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWSHAEENKRRTLQKNDIAAAITRTDIF 132 89***998899*************************************************************************** PP NF-YC 90 dflvdivprdelk 102 dflvdivprde+k Aqcoe3G199100.1.p 133 DFLVDIVPRDEIK 145 ********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.84E-33	28	135	IPR009072	Histone-fold
Pfam	PF00808	3.0E-21	63	126	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.0E-37	64	141	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MENNKAQQQQ HQPPSSSSSY PSTIQQTPPP FHHLIQQQQQ QLQMFWSYQR QEIEQVNDFR 60 NHQLPLARIK KIMKADEDVR MISAEAPILF AKACELFILE LTIRSWSHAE ENKRRTLQKN 120 DIAAAITRTD IFDFLVDIVP RDEIKDETGM GIPYYGPGVT VGRPALPGLD PEMYVHPPSH 180 AWQSVWQTAE DGAYGGGVGG GQANLDGQGY VGHTNSDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-55	49	141	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	119	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250693.1	1e-101	PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X2
Refseq	XP_012467975.1	1e-101	PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1
Swissprot	Q9SMP0	3e-84	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A2G5CR90	1e-162	A0A2G5CR90_AQUCA; Uncharacterized protein
STRING	Aquca_040_00092.1	1e-163	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-84	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Aqcoe3G199100.1.p

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]