PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G201700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 696aa    MW: 80360.4 Da    PI: 8.2675
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G201700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.91e-1068144291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk  GFsvrk++++    +g          + gk ++ +++   +++ r  tr++C a +++  ++  + w v  + ++HnH lap
  Aqcoe3G201700.1.p  68 FYNEYAKFKGFSVRKDHKTVI--DG---------VRAGKWTNLHNR---RKKARRLTRCNCPAAMNIVYDDeLNMWTVRGFMSQHNHVLAP 144
                        9**************985554..55.........677877776655...78899*************9999899*************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-768144IPR004330FAR1 DNA binding domain
PfamPF105512.6E-34236330IPR018289MULE transposase domain
PROSITE profilePS5096610.942502538IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-6513540IPR006564Zinc finger, PMZ-type
PfamPF044342.2E-6513536IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MSAFVDEFVE DFSDDSEAEG DNPRRRNADF LHRVGLRLQD EIHDDIGEIS DEDMLRARFN  60
TDEDAYFFYN EYAKFKGFSV RKDHKTVIDG VRAGKWTNLH NRRKKARRLT RCNCPAAMNI  120
VYDDELNMWT VRGFMSQHNH VLAPPGGSHF LRSHRKVSLS NAVLAQNLYA LGSGSHATAG  180
CTARDLYNQI NRARVERIID GDANLVNSFL EDMNVRDPGF FKKIQSQEDY KLFGDVLMFD  240
STYRTNRYDM PFVVFAGVNN HRHTVIYALA LMNNETIDSY EWALKTFLAA MDGIALKSVI  300
TDGDAAIHNA IENVFPKSKH RLCVWHVVQN VITNVWTEGF VKGFVEAMFC KGPPKAFEKK  360
WAELLIEYKT VAEQKWVHNI YEKKEMWAEG YLREYFFARC RSNQRCESIN SVVLICVNSG  420
LTLIELIDKL LQKIRHIRYR QHRFPTSLIS EQAETLYTRA GYEYLFKQLL HELSYVVNES  480
YEDGEDIIKY LVNRHMHPNA PATVEYNREN DEYNCTCKLF ERVGFLCRHI LAVLKHTHVK  540
ALPKSCILHR WTREAKSSSI DFGTNPTTSC RLGFGPRLKE LEEYSRDLFM WGCESVQRSE  600
RVAQRFDEAP VPKNPLGFKE EPVASTPQQS FPPDNIANSQ RDLGRRGGPR KAKRKMFHQR  660
TSTRCGICHI VGHSRRTCPS NYLSLDFLNL GLVCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100107NRRKKARR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-82FAR1-related sequence 5