PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G209300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25669.8 Da    PI: 5.2223
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G209300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.11.5e-151312151
                       HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51
                       +KKA+ LS+LCdaevavi+fs++gklye++s
  Aqcoe3G209300.1.p  1 MKKASQLSILCDAEVAVIVFSNSGKLYEFAS 31
                       8****************************86 PP
2K-box34.87e-13741561493
              K-box  14 aeslqqelakLkkeienLq.reqRh..llGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                         e l+ + +   ++i  L+ +++++  l  edL  +s  eLq +e qLeksl+ +R+kKne +++ ieel++ke++l +e++a
  Aqcoe3G209300.1.p  74 VEVLKDDEEETVNKIALLEtSNNKKllLREEDLAFCSTDELQDMEIQLEKSLSIVRAKKNERYKDTIEELKQKERMLLSEEQA 156
                        5555555555556666666533333113469*********************************************9887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.92E-18156IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.881133IPR002100Transcription factor, MADS-box
PfamPF003191.3E-12129IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-4132IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.40374168IPR002487Transcription factor, K-box
PfamPF014862.4E-1174156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MKKASQLSIL CDAEVAVIVF SNSGKLYEFA SSSDMSKTID RYQRYTKCKQ TNNNYYNNAA  60
PIQQQQQHHH GRNVEVLKDD EEETVNKIAL LETSNNKKLL LREEDLAFCS TDELQDMEIQ  120
LEKSLSIVRA KKNERYKDTI EELKQKERML LSEEQAMVYD KMSTGLMQPW NQLQSIDHQD  180
CRQNMEVKDE ISTTFSYQVN QKPDVETELF IGLGRPNRSR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802560.0JX680256.1 Aquilegia coerulea MADS-box protein SOC1.4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK7X0L31e-163K7X0L3_AQUCA; MADS-box protein SOC1.4
STRINGAquca_005_00633.11e-164(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.31e-36AGAMOUS-like 71