PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G212400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family BBR-BPC
Protein Properties Length: 271aa    MW: 29578.3 Da    PI: 10.2031
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G212400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind250.88.6e-7779270108301
          GAGA_bind 108 idslqqlsepqledsavelreeeklealpieeaaeeakekkkk.kkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvl 198
                        ++ +q  +e+ l   ++ + +  +  ++ +e+ ++++k +k++  k++++   k +k k++kk s+    ++kk+++++++ ++k+++d+v+
  Aqcoe3G212400.1.p  79 LHCTQINTETGLPAVPISMFKPTNGPTNDTEHVNNSSKIRKQSfTKKSNGVASKPSKPKQPKKPSD---ASTKKKGDSTSTVKQKRNLDFVI 167
                        444444444444444444333333333333333333332222202233333444444555555333...333444434567778999***** PP

          GAGA_bind 199 ngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290
                        +g ++D s++P PvCsCtGa rqCY+WG+GGWqS+CCtt+iS yPLP+s+ r+gaR+agrKmS+ga+ klL++Laa+Gyd+s +vDLkdhWA
  Aqcoe3G212400.1.p 168 DGTTIDFSQMPSPVCSCTGAFRQCYRWGAGGWQSSCCTTSISEYPLPMSSSRPGARVAGRKMSNGAYGKLLQRLAADGYDFSDAVDLKDHWA 259
                        ******************************************************************************************** PP

          GAGA_bind 291 kHGtnkfvtir 301
                        kHGtnkfvti+
  Aqcoe3G212400.1.p 260 KHGTNKFVTIK 270
                        **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.8E-761270IPR010409GAGA-binding transcriptional activator
SMARTSM012261.7E-851270IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDDKARLGHR NWDFSTQTVG VPFPSGANEH HASFLKMGMH PHRNSMIPEA EGSGMEFGSH  60
VWVHQRNFLS AAKTNPDSLH CTQINTETGL PAVPISMFKP TNGPTNDTEH VNNSSKIRKQ  120
SFTKKSNGVA SKPSKPKQPK KPSDASTKKK GDSTSTVKQK RNLDFVIDGT TIDFSQMPSP  180
VCSCTGAFRQ CYRWGAGGWQ SSCCTTSISE YPLPMSSSRP GARVAGRKMS NGAYGKLLQR  240
LAADGYDFSD AVDLKDHWAK HGTNKFVTIK *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9822960.0FJ982296.1 Aquilegia viridiflora GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276763.11e-122PREDICTED: protein BASIC PENTACYSTEINE7-like
RefseqXP_010276764.11e-122PREDICTED: protein BASIC PENTACYSTEINE7-like
RefseqXP_010276765.11e-122PREDICTED: protein BASIC PENTACYSTEINE7-like
SwissprotO822864e-60BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A2G5ET170.0A0A2G5ET17_AQUCA; Uncharacterized protein
STRINGAquca_005_00609.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.12e-59basic pentacysteine 7