PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G219400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 361aa    MW: 40295 Da    PI: 6.3894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G219400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.5e-191461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd+ lvd++k++G g+W++ ++  g++R++k+c++rw +yl
  Aqcoe3G219400.1.p 14 KGPWTPEEDDMLVDYIKRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                       79********************************************97 PP
2Myb_DNA-binding569.2e-1867112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++++eE++l++ ++  lG++ W+ Ia +++ gRt++++k++w+++l
  Aqcoe3G219400.1.p  67 RGKFSEEEEQLIISLHSVLGNK-WSQIATHLP-GRTDNEIKNYWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.666961IPR017930Myb domain
SuperFamilySSF466891.5E-3211108IPR009057Homeodomain-like
SMARTSM007172.5E-151363IPR001005SANT/Myb domain
PfamPF002493.5E-171461IPR001005SANT/Myb domain
CDDcd001678.81E-121661No hitNo description
PROSITE profilePS5129428.96362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2865116IPR009057Homeodomain-like
SMARTSM007171.9E-1766114IPR001005SANT/Myb domain
PfamPF002491.3E-1667112IPR001005SANT/Myb domain
CDDcd001678.45E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGRSPCCDEF GLKKGPWTPE EDDMLVDYIK RHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEQLIIS LHSVLGNKWS QIATHLPGRT DNEIKNYWNT HLKKKLLQMG  120
IDPITHRPRT DLNLLANLPH LLAAANLSNL MNPWDNALRL QADAAQLAKI QLLHSLTQVL  180
NTSTAPPNMD LLNQLGSAPV QDYLLNEYLR SNSQFDGLAN GHHPLGLNVT DPNQNLSSFS  240
NLVAQQPNHE YQAMANTFSR LEGEPNSNMS NIDNYHLSSS SHSIASANTI PALVSASPES  300
SIVNQTESKV NPNDIISTHS STSTTLEAWF NLDDEANNDY YWKELLLDQT TSPSSWPISQ  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634006.11e-146PREDICTED: transcription factor MYB39
RefseqXP_022746687.11e-146transcription factor MYB41-like
SwissprotQ9S9Z23e-93MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2G5ES760.0A0A2G5ES76_AQUCA; Uncharacterized protein
STRINGAquca_005_00496.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.14e-86myb domain protein 107
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]