PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G222700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 498aa    MW: 57376.5 Da    PI: 8.2024
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G222700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.31.4e-0968137270
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr...traetrtgCkaklkvkk 70 
                        fYneYA+  GFsv k++++    +g++ +r+f Cs+ g+r+++ ++ ++++r    ++    +C   l v+k
  Aqcoe3G222700.1.p  68 FYNEYANFKGFSVHKDHKTII--KGKTCRRRFICSCAGQRADKWSNLQRSHRkvsVSNALLAQCLYGLGVSK 137
                        9**************997776..8889***************999933333301122223345655555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-768123IPR004330FAR1 DNA binding domain
PfamPF105511.0E-25227312IPR018289MULE transposase domain
PROSITE profilePS5096610.249459495IPR007527Zinc finger, SWIM-type
SMARTSM005756.8E-5470497IPR006564Zinc finger, PMZ-type
PfamPF044345.0E-5471493IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MSSYVDKFVE EFSDDSEAES DIPRRRNVDL LCQVYVRLQQ EIHEDMGQFS DPDILDARFD  60
TDEEAYLFYN EYANFKGFSV HKDHKTIIKG KTCRRRFICS CAGQRADKWS NLQRSHRKVS  120
VSNALLAQCL YGLGVSKTKV IDLIVARVSS HAIAGCTKQN LYNQMNRSRV ERIIDGDVNV  180
VNAYMEDMSM NDPGFFKKHQ VNEKQQLTKL FWSDSQSQED YKLFGDTNRY GMPLVVFAGV  240
NNHRHTVIFA LALMNTTTTK SYIWALEAFI TAMDNVAPKS MITNGDAAIR SSIETVLPNS  300
KHRLCVWHLV QNSLTNVHTQ EFSKDFVDVI FCKGPPENFE KKWGCRSNQR CESINSVVRL  360
CVKAGLTLIE LVERLLIKVK YIRHRDFEAE VNTMMTRSAQ IPNLSRIGER AEALYTQGGY  420
EYLYKQLLHE PSYVVNETYE DGVNIKYLVN RHMYPNSPQT VKYMRDTDAY KCSCKLFERV  480
GFICRHILVV LKHTHVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-45FAR1-related sequence 5