PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G223000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 375aa    MW: 41221.5 Da    PI: 6.7696
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G223000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-07114138126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC+ f+  GtC+y  +C+FaHg
  Aqcoe3G223000.1.p 114 FKTKLCCKFRN-GTCPYITNCNFAHG 138
                        69*********.*************8 PP
2zf-CCCH18.53.6e-06188213126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        yk + C+ f+    C+yGd+C+F H+
  Aqcoe3G223000.1.p 188 YKGRHCKKFYTEEGCPYGDNCTFLHD 213
                        77888********************7 PP
3zf-CCCH44.52.5e-14249274126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt++C+ +  tG+C++G++C+FaHg
  Aqcoe3G223000.1.p 249 WKTRICNKWEMTGYCPFGSKCHFAHG 274
                        8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-14111146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.81E-8111144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.253113140IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023113139IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-5114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-9186215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7186215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23187215IPR000571Zinc finger, CCCH-type
SMARTSM003560.058187214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-17244278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-10245279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.478248276IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-9248275IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-11249274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDYGGGGEGR FTSGNVVEII PQSQDIGNLD NWMPGLNDQA IWATEDDYNV WNADASVDTP  60
SNSNYDGRQS QTRSGSEPPN KKSRSSQGGD SQLSGFGRDM TSGNRSRAIG KMFFKTKLCC  120
KFRNGTCPYI TNCNFAHGIE ELRKPPPNWQ EIVAAQDDDR GVSSEPREEH QIPCLISSGL  180
GAESQRSYKG RHCKKFYTEE GCPYGDNCTF LHDEQSKARE SVAISLGPTM GNNGYGNNVN  240
GSNQKPSNWK TRICNKWEMT GYCPFGSKCH FAHGLGELHR YGGGLVDVEG RDVASVPSDM  300
KQVGVSSKTP METVVASSTL APHTDVYHMG VPSQRSSGIN VRPGLRPIQK WKGPDKISRI  360
YGDWIDDNEW DTPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240878.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-137C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2G5C2770.0A0A2G5C277_AQUCA; Uncharacterized protein
STRINGAquca_117_00002.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-125C3H family protein