PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G223900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 200aa    MW: 22878.9 Da    PI: 8.8046
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G223900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.12.8e-242572249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       +ie + +rqvtfskRr g++KKA+EL++LC ae+a+++ s+ gk+y++
  Aqcoe3G223900.1.p 25 KIERSERRQVTFSKRRMGLFKKASELCILCSAEIAILVSSPAGKVYTF 72
                       5999*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-291675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.5441676IPR002100Transcription factor, MADS-box
CDDcd002652.13E-341792No hitNo description
SuperFamilySSF554551.7E-261795IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-191838IPR002100Transcription factor, MADS-box
PfamPF003199.4E-242572IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-193853IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-195374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDPPSTAATV PKKRSTGRKK IAIVKIERSE RRQVTFSKRR MGLFKKASEL CILCSAEIAI  60
LVSSPAGKVY TFGHPCVEAT LDRFLNQQQH DHMNHGGNNN NNINVGALNV SMQDQQQQHE  120
YNEIASLLEK EKKRGEALEY LRKGDWNGNY DYQFWWDAPI ENLELHELNP MKTKLEELRK  180
MVESKLVVDD HNNNNSSRV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802350.0JX680235.1 Aquilegia coerulea MADS-box protein AGL74 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK7X7E31e-148K7X7E3_AQUCA; MADS-box protein AGL74
STRINGAquca_005_00477.11e-149(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-39AGAMOUS-like 61