PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G228400.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LSD
Protein Properties Length: 148aa    MW: 15378.9 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G228400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.21.3e-133054125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       C+gCr+lL YP GA+sV+Ca+C++V
  Aqcoe3G228400.2.p 30 CSGCRNLLLYPVGATSVCCAVCNAV 54
                       ************************9 PP
2zf-LSD146.85e-156993125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       CggC+tlL+Y rGA+sV+C++C+tV
  Aqcoe3G228400.2.p 69 CGGCHTLLMYIRGATSVQCSCCHTV 93
                       ************************9 PP
3zf-LSD141.81.7e-13107131125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+Cr lL+Y +GA+sV+Ca+C++V
  Aqcoe3G228400.2.p 107 CGNCRMLLMYQYGARSVKCAVCNFV 131
                        ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.103.7E-425128No hitNo description
TIGRFAMsTIGR010531.1E-122757IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-103054IPR005735Zinc finger, LSD1-type
SuperFamilySSF486956.14E-530128IPR011031Multihaem cytochrome
TIGRFAMsTIGR010538.9E-156695IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126993IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.1E-12104134IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12107131IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MPVPLAPYPT PPVSYSLPPP ANGAQSQLVC SGCRNLLLYP VGATSVCCAV CNAVTTVPPP  60
GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLAMEAN QVAHVNCGNC RMLLMYQYGA  120
RSVKCAVCNF VTSVGASPST TEQKFNT*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075917.12e-93protein LOL1
RefseqXP_012075918.12e-93protein LOL1
RefseqXP_012075919.12e-93protein LOL1
SwissprotQ93ZB18e-81LOL1_ARATH; Protein LOL1
TrEMBLA0A2G5CPJ21e-100A0A2G5CPJ2_AQUCA; Uncharacterized protein
STRINGAquca_044_00148.11e-97(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-69lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]