PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G231100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 258aa    MW: 28521.4 Da    PI: 5.2682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G231100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000137597123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  Aqcoe3G231100.1.p 75 YTCTFCRREFRSAQALGGHMNVH 97
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-672101No hitNo description
PfamPF139122.0E-57598IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.15775102IPR007087Zinc finger, C2H2
SMARTSM003550.00667597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAADLGLLSL SQLQKLAHSQ QQQKQEQQQN PSSTAGSWMW NPTRQNTDDD DSWEVRAFAQ  60
DTGNIMGTTW PPRSYTCTFC RREFRSAQAL GGHMNVHRRD RARLRQSPPA SINDPSLSSN  120
SSSAILFPTQ EFVANGGLCL LYSLPSPNSV FNPNSMNGCV DPSTLLSISP YQTNNLMASC  180
PTLNFTQTTN NVHGHGSVCQ TDKLDEPTVS VNNNIQDDNN HITSNEETNN DKMEVVEELD  240
LELRLGSSRP PRPQKQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-137097229superman protein
2l1o_A2e-137097229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278326.12e-89PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A2G5D8R90.0A0A2G5D8R9_AQUCA; Uncharacterized protein
STRINGAquca_026_00394.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-36C2H2 family protein