PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G236400.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 333aa    MW: 37361.5 Da    PI: 5.7355
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G236400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1752.2e-5441311128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtdeelv +yLkkkv+g k++l evi+e+d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+
  Aqcoe3G236400.2.p   4 LPPGFRFHPTDEELVGYYLKKKVDGVKIDL-EVIPEIDLYKFDPWELPdKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATRAGYWKATGKDR 94 
                        79****************************.99**************96434556788********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v++ ++ ++g +ktLvfy+grap g +tdWvmheyrl
  Aqcoe3G236400.2.p  95 KVTC-QSDVIGFRKTLVFYRGRAPLGDRTDWVMHEYRL 131
                        ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-612154IPR003441NAC domain
PROSITE profilePS5100558.7384154IPR003441NAC domain
PfamPF023656.6E-305131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MASLPPGFRF HPTDEELVGY YLKKKVDGVK IDLEVIPEID LYKFDPWELP DKSFLPKRDM  60
EWFFFCPRDR KYPNGSRTNR ATRAGYWKAT GKDRKVTCQS DVIGFRKTLV FYRGRAPLGD  120
RTDWVMHEYR LCDTLPQGLS GSQGAFALCR VVKRNEKTVD VEGESKSKRE RSSAVAGNFT  180
PGTYSNEYLN MSNGSLSQAS VIYSGSSYSS PVNSPYDTRR FGDLERASHL SSPWPIPSDL  240
ILDTSKGQDV STCFTGHDSS NMQASCSSVE FSSTPSYANF TQDGLANDFG RVSCMSPYLE  300
SANYMDLCDD TTYQSFDQSY SLGHPDFSIN ND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-54315516166NO APICAL MERISTEM PROTEIN
1ut4_B3e-54315516166NO APICAL MERISTEM PROTEIN
1ut7_A3e-54315516166NO APICAL MERISTEM PROTEIN
1ut7_B3e-54315516166NO APICAL MERISTEM PROTEIN
4dul_A3e-54315516166NAC domain-containing protein 19
4dul_B3e-54315516166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280894.21e-129PREDICTED: NAC domain-containing protein 86
TrEMBLA0A2G5CNG10.0A0A2G5CNG1_AQUCA; Uncharacterized protein
STRINGAquca_044_00122.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.18e-88NAC domain containing protein 71