PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G249500.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

G2-like

Protein Properties

Length: 508aa MW: 57556.6 Da PI: 6.5479

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G249500.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.7	5.3e-28	324	377	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k +++Wtp+LH+rFv+aveqL G ++A+P++il+lmkv+gLt+++v+SHLQkYR+ Aqcoe3G249500.3.p 324 KMKVDWTPDLHKRFVQAVEQL-GVDQAIPSRILDLMKVEGLTRHNVASHLQKYRM 377 5689***************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	1.57E-10	16	139	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	2.1E-11	16	152	No hit	No description
PROSITE profile	PS50110	16.216	19	132	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS51294	13.721	321	380	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-27	322	381	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.08E-17	323	380	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-25	324	378	IPR006447	Myb domain, plants
Pfam	PF00249	5.9E-8	327	376	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MVCTADDLLG WKDFPKGLKV LLLKEDGISA TEIKSKLEEM DYIVSTLFNL DDALMEISNK 60 PGSFHVAIVE VSTNNQHECF KFLETARDLP TIMISNIQCL STMMKCIALG AAEFLQQPLS 120 EDKLRNIWQH VVHKAFNAKE SDLTKSLKPI KDTVVSMLQL PRETNDTEDY NLLETENSAQ 180 SRECENEQST VSDKFPAPST PQLKQGCRFS DDGDCQDHTN FLVDKAHRGI EGESKSVDTT 240 CNYLVAETTS DNSLAEVTVT VDPSTTASEA MIKEEDSLEN SRSGSSLVSH PQRKENKTDS 300 ISEVKNPRRA SLHPNPCGKK SNRKMKVDWT PDLHKRFVQA VEQLGVDQAI PSRILDLMKV 360 EGLTRHNVAS HLQKYRMQRR HIAPKDDDRR WQHPRDSIQR VYPQKPIMAY PPYHPNHGFS 420 TNQFYPVWGH PSNHLQNIQM WGHPGFHTWH PGMHADAWGR PILPLSQGPY SNYPQNASGF 480 QNVYAYEDNN NVPKNSFDFN PDKKAPY*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MVCTADDLLG WKDFPKGLKV LLLKEDGISA TEIKSKLEEM DYIVSTLFNL DDALMEISNK  60
PGSFHVAIVE VSTNNQHECF KFLETARDLP TIMISNIQCL STMMKCIALG AAEFLQQPLS  120
EDKLRNIWQH VVHKAFNAKE SDLTKSLKPI KDTVVSMLQL PRETNDTEDY NLLETENSAQ  180
SRECENEQST VSDKFPAPST PQLKQGCRFS DDGDCQDHTN FLVDKAHRGI EGESKSVDTT  240
CNYLVAETTS DNSLAEVTVT VDPSTTASEA MIKEEDSLEN SRSGSSLVSH PQRKENKTDS  300
ISEVKNPRRA SLHPNPCGKK SNRKMKVDWT PDLHKRFVQA VEQLGVDQAI PSRILDLMKV  360
EGLTRHNVAS HLQKYRMQRR HIAPKDDDRR WQHPRDSIQR VYPQKPIMAY PPYHPNHGFS  420
TNQFYPVWGH PSNHLQNIQM WGHPGFHTWH PGMHADAWGR PILPLSQGPY SNYPQNASGF  480
QNVYAYEDNN NVPKNSFDFN PDKKAPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	2e-16	329	377	6	54	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010275314.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X1
Refseq	XP_010275315.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X1
Refseq	XP_010275317.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X1
Refseq	XP_010275318.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X1
Refseq	XP_010275319.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X1
Refseq	XP_010275321.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X3
Refseq	XP_010275322.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X4
Swissprot	Q6LA43	1e-117	APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBL	A0A2G5CMV3	0.0	A0A2G5CMV3_AQUCA; Uncharacterized protein
STRING	Aquca_044_00072.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.5	1e-120	ARR-B family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G249500.3.p

Publications ? help Back to Top
Gong L, et al. Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions. PLoS ONE, 2015. 10(5): p. e0128041 [PMID:26010543]