PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G249500.4.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family G2-like
Protein Properties Length: 532aa    MW: 60236.9 Da    PI: 6.9287
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G249500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.65.7e-28304357155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k +++Wtp+LH+rFv+aveqL G ++A+P++il+lmkv+gLt+++v+SHLQkYR+
  Aqcoe3G249500.4.p 304 KMKVDWTPDLHKRFVQAVEQL-GVDQAIPSRILDLMKVEGLTRHNVASHLQKYRM 357
                        5689*****************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.7E-728132No hitNo description
SuperFamilySSF521721.28E-658119IPR011006CheY-like superfamily
PROSITE profilePS5129413.721301360IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-27302361IPR009057Homeodomain-like
SuperFamilySSF466891.16E-17303360IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-25304358IPR006447Myb domain, plants
PfamPF002496.3E-8307356IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MSWKIGVKLS IRWSISFFVT CSAVSTLFNL DDALMEISNK PGSFHVAIVE VSTNNQHECF  60
KFLETARDLP TIMISNIQCL STMMKCIALG AAEFLQQPLS EDKLRNIWQH VVHKAFNAKE  120
SDLTKSLKPI KDTVVSMLQL PRETNDTEDY NLLETENSAQ SRECENEQST VSDKFPAPST  180
PQLKQGCRFS DDGDCQDHTN FLVDKAHRGI EGESKSVDTT CNYLVAETTS DNSLAEVTVT  240
VDPSTTASEA MIKEEDSLEN SRSGSSLVSH PQRKENKTDS ISEVKNPRRA SLHPNPCGKK  300
SNRKMKVDWT PDLHKRFVQA VEQLGVDQAI PSRILDLMKV EGLTRHNVAS HLQKYRMQRR  360
HIAPKDDDRR WQHPRDSIQR VYPQKPIMAY PPYHPNHGFS TNQFYPVWGH PSNHLQNIQM  420
WGHPGFHTWH PGMHADAWGR PILPLSQGPY SNYPQNASGF QNVYAYEDNN NVPKNSFDFN  480
PAEEVIDKVV REAINKPWLP LPLGLKPPST EMVLSELHRQ GICNIPPHNQ C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-16309357654Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275321.10.0PREDICTED: two-component response regulator-like APRR2 isoform X3
TrEMBLA0A2G5CN690.0A0A2G5CN69_AQUCA; Uncharacterized protein
STRINGAquca_044_00072.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-109ARR-B family protein