PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G251200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 320aa    MW: 35461.7 Da    PI: 8.2037
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G251200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.7e-08260303243
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                        ++W+  Ed  l++a k ++++   +W++Ia  ++ gR+  +c  r
  Aqcoe3G251200.1.p 260 LSWSSAEDIALLNALKAFPKEvsmRWEKIAVAVP-GRSKASCMKR 303
                        58********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.3160212IPR001005SANT/Myb domain
SuperFamilySSF466894.29E-5162201IPR009057Homeodomain-like
PROSITE profilePS500904.008164197IPR017877Myb-like domain
SMARTSM007171.4E-5258310IPR001005SANT/Myb domain
SuperFamilySSF466893.98E-9260307IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-6261309IPR009057Homeodomain-like
PfamPF002492.9E-6261303IPR001005SANT/Myb domain
CDDcd001672.33E-6261308No hitNo description
PROSITE profilePS500907.108261308IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEFLDEESRP KISFQSRVTS SSSSSLPELE TQRINKPIAF VCVFISVIVS LLTIFFLESE  60
TLRFILIWFS IAFIVGPFAP ISITGGDIRV GEGEVVEFPD EAVVESDEDL KKRVPNRRNR  120
SRRSEEPLGM AVIGGDLMGK VVVVEEKSEK KKGEKDLVSE EKEWNDGDFD LLKKQILKHP  180
VGTPKRWELI AEVFKGRHGV DSVIKTAKSL SEKKPGSGDS FSQFLKQRKP LDKRMEDGNG  240
ELIENGEVKK ENGGVGGEGL SWSSAEDIAL LNALKAFPKE VSMRWEKIAV AVPGRSKASC  300
MKRVTELKKG FRSSKASAE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269930.11e-120PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_010269931.11e-120PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A2G5CMU30.0A0A2G5CMU3_AQUCA; Uncharacterized protein
STRINGAquca_044_00062.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.17e-64MYB_related family protein